Acap017892.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apotomis capreana
Gene Symbol
Ssrp
Assembly
GCA_947623375.1
Location
OX392512.1:19723916-19749497[-]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 5.4 5.3e+03 -1.1 0.5 43 57 291 305 290 307 0.81
2 10 1.3e-16 1.3e-13 52.2 0.1 1 45 547 591 547 595 0.96
3 10 7.3e-08 7.3e-05 24.1 0.1 15 45 593 623 591 627 0.91
4 10 7.3e-08 7.3e-05 24.1 0.1 15 45 625 655 623 659 0.91
5 10 6.7e-08 6.7e-05 24.3 0.1 14 45 656 687 654 691 0.91
6 10 6.6e-08 6.6e-05 24.3 0.1 14 45 688 719 686 723 0.91
7 10 9.6e-08 9.6e-05 23.7 0.1 15 45 721 751 719 753 0.92
8 10 7.3e-08 7.3e-05 24.1 0.1 15 45 753 783 751 787 0.91
9 10 8.4e-08 8.4e-05 23.9 0.1 14 45 784 815 782 819 0.92
10 10 2.4e-12 2.4e-09 38.5 0.0 7 45 835 873 833 874 0.95

Sequence Information

Coding Sequence
ATGGAATTCCTAGAATACAACGATGTATCTGCGGAAATTAAAGGCGCTATGGTGCCTGGAAGATTAAAAATGACCGATCAGAATATTGTATTCAAGAACAGCAAGACCGGAAAAGTGGAACAGATTTCAGCCAACGATATAGAGCTTGTACATTTCCAAAAATTCATAGGCTCTTGGGGTCTGCGAATATTTCTAAAAAATGGTACACTACACAGATATGGAGGTTTTAAAGAAGGGGAACAAGACAAAGTTGCCAAATTCTTCAAATCAAACTACAAAAAGGACATGCTGGAGAAGGAGTTGTCCCTAAAGGGTTGGAACTGGGGCACGGCCAAGTTCAATGGGGCCTTGCTCAGCTTCAACGTTGGCTCCAACACTGCCTTTGAGATTCCTTTGCATTATGTGTCACAGTGCAATACGGGCAAAAATGAAGTCACACTTGAGTTTCATCAGAATGACGACACCCCAGCATCCTTGATGGAGATGCGCTTCCATATTCCAACAAACGAGCTGGCAGGTGACATGGATGCCGTGGAAGCATTCCACCAGCAGGTCATGAACAAGGCCAGCGTTATATCTGTGTCTGGTGACGCCATTGCCATCTTCAGGGAGCTACAGTGCCTTACACCTAGAGGTCGCTATGACATCAAAGTATTCCAAACATTCTTCCAACTCCACGGTAAAACGTTCGACTACAAGATCCCGATGTCGACGGTGCTGCGGCTGTTCCTGCTGCCGCACAAGGACACGCGGCAGATGTTCTTCGTGGTGTCGCTGGACCCGCCCATCAAGCAGGGCCAGACGCGGTACCACTACCTCGTGCTGCTTTTCGGGATTGAAGAGGAGACCAGCTTGGAACTGCCTTTTACGGAGGAGGAGCTTAAAGAGAAATACGAAGATAAGATCTCAAAGGAGCTCTCAGGGCCTACTTACGAAGTGCTCGCCAAAATAATGAAGGTCATCATAAACAGGAGGGTCACCGGCCCTGGCGACTTCTTAGGGCACCACAAGACGCCGGCGGTCGCGTGCTCGTACAAGGCGGCGGCGGGCTACCTGTACCCGCTGGAGAAGGGCTTCATCTACGTGCACAAGCCGCCCGTGCACATCCGCTTCGAGGAGATCGCCTCCGTCAACTTCGCCAGGGGCGGCGCCTCCTCCACCAAATCGTTCGATTTCGAGATCGAGTTGAAATCAGGCAGTGTTCACACGTTCAGCAGTATCGAGAAGGGCGAGTACGACAAGCTGTTCGACTACATCACCTCCAAGAAGCTGCACGTTAAGAACACGGGCAAAAATGACAAAGCCCTATACGACGACGACTTCGGCGACTCGGACACCGAGAAGGAGCCCGACGCGTACCTGGCGCGAGTCAAGGCGGAGGCCAAGGAGCGGGAGAGCGACGACAGCGACGACGAGAGCACCGACGAAGACTTCAACCCCGACAAGGCCAAGGAGAGCGACGTGGCCGAAGAATACGATACGAACCCATCGTCTTCGGAAGACTCGGACGCGTCCGGCGCCTCCAACGACAGCAAAAAAGAGAAGAAGAAGGAAAAGAAACCCAAGAAGGCCATTACGATCTCGGAAGCGCCCCGGAAACGCAAAGAGAAGTCGAAGAAGGAGAAAGACGCGAACGCCCCCAAGCGGCCGTCGACGGCGTTCATGCTGTGGCTGAACGAGAGCCGCAAGCAGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCAGCCGCAAGCGGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCGTACGTATCCACCAGTCCACGCACAGCCCTGTAGCACACAGCCTGCATAACCGGTTATACATGCTGTGGCTGAACGAGAGCCGCAAGCAGATCACGGAGGAGAACCCCGGCATCAAGGTCACCGAGATCGCCAAGCGCGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCCGTCAGTATCCCAAGCCCACGCACAGCCCTGTAG
Protein Sequence
MEFLEYNDVSAEIKGAMVPGRLKMTDQNIVFKNSKTGKVEQISANDIELVHFQKFIGSWGLRIFLKNGTLHRYGGFKEGEQDKVAKFFKSNYKKDMLEKELSLKGWNWGTAKFNGALLSFNVGSNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPASLMEMRFHIPTNELAGDMDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETSLELPFTEEELKEKYEDKISKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAVACSYKAAAGYLYPLEKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKSGSVHTFSSIEKGEYDKLFDYITSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLARVKAEAKERESDDSDDESTDEDFNPDKAKESDVAEEYDTNPSSSEDSDASGASNDSKKEKKKEKKPKKAITISEAPRKRKEKSKKEKDANAPKRPSTAFMLWLNESRKQITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSSRKRITEENPGIKVTEIAKRGGELWRDLKDKSVRIHQSTHSPVAHSLHNRLYMLWLNESRKQITEENPGIKVTEIAKRGGELWRDLKDKSVSIPSPRTAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824735;
90% Identity
-
80% Identity
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