Hscr031556.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438994.1:4604860-4607234[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.19 20 6.9 0.4 1 23 62 84 62 84 0.98 2 17 0.00085 0.09 14.3 0.2 1 23 88 110 88 110 0.95 3 17 0.04 4.2 9.0 0.4 1 23 115 138 115 138 0.91 4 17 0.0006 0.064 14.8 2.5 1 23 144 167 144 167 0.96 5 17 3.1e-05 0.0033 18.8 0.2 1 23 174 197 174 197 0.98 6 17 1.2e-05 0.0013 20.1 1.5 1 23 203 225 203 225 0.97 7 17 1.5e-06 0.00017 22.9 2.7 1 23 231 253 231 253 0.99 8 17 0.00073 0.078 14.5 6.7 1 23 259 281 259 282 0.95 9 17 0.012 1.3 10.7 1.7 1 23 393 416 393 416 0.97 10 17 0.39 42 5.9 0.1 2 23 441 463 440 463 0.93 11 17 0.077 8.2 8.1 0.1 1 23 487 509 487 509 0.96 12 17 0.00026 0.027 15.9 0.2 1 23 513 535 513 535 0.98 13 17 6.7e-05 0.0071 17.8 0.4 1 23 540 563 540 563 0.96 14 17 0.0028 0.3 12.7 0.3 2 23 570 592 570 592 0.93 15 17 0.1 11 7.7 6.4 1 23 599 622 599 622 0.95 16 17 1.3e-05 0.0014 20.0 2.7 2 23 629 650 628 650 0.96 17 17 0.00012 0.013 17.0 1.6 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- ATGTCTAAATTGAGAAAATACGAGTTAGTGAAGATAGATGTAACCGATGTCAGCTGCAAGCTGTGTGAAGATCATATCCTTGACTTCCCATCTTTGAAGTGGCATTTACTGGAAAAGCACAATAAACAGTTAGACCCTAAGTCTGCTGATGGAGTGTTGCCATTCAAAGTAACAACAGACGATTTCCAATGTGTATTGTGTATAGAAAAATACTCGGAGtttaaattgttaaatcaaCATATAAATGTACATTTCCAGAATTTTATATGCGAGCAATGCGGTACTGGGTTCGTCACGCCGGAGCGGTTAAGAACTCACGCATTCTCACATGAGACGGGCTCGTTTCCTTGTGATAGCTGCGATAAAATATTCCGTTCTACTAACGCGAAAAATGAACATTTTGCAACAGTACACATGAAGGTGAAGCGCCACAGATGCCCTCAATGTCCCGAAACTTTCAGAAACTATTTCCAAAGAAATAAGCACATTTCTTCAGTTCATGGTGTGaagttaaaagaatttaaatgcACCATGTGTCCGAAAGTATTCACTTTAAGTGGAAAACTGGGTGTACATGTCAGGACAGTGCACCTGAAGATGAAGAGACATTCCTGCGAAGTCTGCGAGTGGAAATTTTATTCCAAGTCTGAGTTGAAAGAGCATATGATAAGACACGGTGGGGAAAGAAAGTTTCAGTGCAGCGTTTGCAAGAAAGCGTACGCCAGGAAGCATACATTAAGAGAACATATGAGAATTCATGAAAATGATAGGCGTTTCATATGTGCTACTTGTGGCACTTCGTTTGTACAAAAATGTAGCCTAAAACATCATACTAAAATCCACCATTCCAACTCAGCCCAAAGAACCGTCTCGCCCATACGTGACTCCAAGCGAAGAATCGTGCCGTTATTCCAGGTGTCTTACGACAGAAGTTTGTGTAAGCCACTGGGCACCTTAGTGAACTTCAGTGCACTCAAAAAGAATTTTACTAGACATACTCCATCACGAAGTCCTTCACCTGTAAACGTATCAAGATCATCATCTCCGTATATTGAACGACCAGAATCAATCGAAACTATTCATCAAAAGACTAAGAAAAATCCAGATATCAGACAGAACGCTCTATCTGTGTTCGAATATTCAACCGTATACCCATTCGTATATGggaataataaattcaaatgttttgtGTGCTCGCAACCCTTTTTAGACCTACACTTGCTCAAGGATCATATGCGTGAAACTCATAATTTTGCTCCACTTAAAAGATTAGTTAATAATAGAAGAGAAAACGTTTTAAAAGTGGATGTCAGTGATATTACCTGTAAAATATGTTCAGCAAAACCATCTGATTTGGTCCAGTTAAAACAACATCTCAAAGAAGTTCACGACAAACCAATAAACTTAGATCTTCAAGATAATTTAATACCATTCAAATTAGAATTAGACAACGGGTCTTACAAGTGTGTTATTTGTCAGGAAATGTTCATCAAAGTTAGAATATTAGTTATCCATATGAGTATACACTTTAATAACTATAGTTGCGAAGTTTGCGGTTCTGCATTCATGACGTTGCGGCTTCTTAAAAAGCATTTGGAAGTCCATGAAGCCGGCAACTACCCGTGTGACCGTTGTAACAAAGTTTTCAGTACTCCTTACAAAAGGACGTTGCATATCCGAGGCGTGCATCTTAAGCAGTTCCCGAGAAGATGTCCAATATGTCCAGAGAGGTTCAACTCAAATTATAAAAGGACCATTCATTTGCAAGATGTCCATAACCAATCTACAAGAGTGCATAAATGTGAGACTTGTGGACGtggttttaatttgaaataccaTTTGATCTGTCACACAAAGTCTGTTCATTTACAAGAGAGGAACCAGCAATGCGAGATTTGTCAGCAAAGGTTTTGTAATAAAGAGTCTTTGAAACGACACATGGTAATACATACTGGTGAAAAGAATCATAAATGTGAAGTTTGTGGGATGGCATTTTTGAGGAGGAAGAACTTGAAGGATCATTTACGTTTGCATAATATAGATTAG
- Protein Sequence
- MSKLRKYELVKIDVTDVSCKLCEDHILDFPSLKWHLLEKHNKQLDPKSADGVLPFKVTTDDFQCVLCIEKYSEFKLLNQHINVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDSCDKIFRSTNAKNEHFATVHMKVKRHRCPQCPETFRNYFQRNKHISSVHGVKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKMKRHSCEVCEWKFYSKSELKEHMIRHGGERKFQCSVCKKAYARKHTLREHMRIHENDRRFICATCGTSFVQKCSLKHHTKIHHSNSAQRTVSPIRDSKRRIVPLFQVSYDRSLCKPLGTLVNFSALKKNFTRHTPSRSPSPVNVSRSSSPYIERPESIETIHQKTKKNPDIRQNALSVFEYSTVYPFVYGNNKFKCFVCSQPFLDLHLLKDHMRETHNFAPLKRLVNNRRENVLKVDVSDITCKICSAKPSDLVQLKQHLKEVHDKPINLDLQDNLIPFKLELDNGSYKCVICQEMFIKVRILVIHMSIHFNNYSCEVCGSAFMTLRLLKKHLEVHEAGNYPCDRCNKVFSTPYKRTLHIRGVHLKQFPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTKSVHLQERNQQCEICQQRFCNKESLKRHMVIHTGEKNHKCEVCGMAFLRRKNLKDHLRLHNID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441767; iTF_00281617; iTF_00282646; iTF_00707194; iTF_01198012; iTF_00795031; iTF_00405256;
- 90% Identity
- iTF_01198012;
- 80% Identity
- -