Cnup054237.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:17586718-17589808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.47 12.8 1.3 1 23 5 27 5 27 0.94 2 17 0.096 17 7.9 0.4 1 23 100 122 100 122 0.97 3 17 0.0009 0.16 14.3 0.2 1 23 126 148 126 148 0.95 4 17 0.015 2.6 10.4 0.4 1 23 153 176 153 176 0.91 5 17 0.0032 0.56 12.5 2.5 1 23 182 205 182 205 0.93 6 17 3.3e-05 0.0058 18.8 0.2 1 23 212 235 212 235 0.98 7 17 1.6e-05 0.0028 19.7 0.9 1 23 241 263 241 263 0.96 8 17 1.9e-06 0.00034 22.6 2.0 1 23 269 291 269 291 0.99 9 17 0.065 11 8.4 0.4 1 23 412 435 412 435 0.97 10 17 0.37 64 6.0 0.1 2 23 460 482 459 482 0.93 11 17 0.25 44 6.6 0.1 1 23 506 528 506 528 0.96 12 17 0.00029 0.052 15.8 0.2 1 23 532 554 532 554 0.98 13 17 0.00037 0.065 15.5 0.4 1 23 559 582 559 582 0.95 14 17 0.003 0.52 12.6 0.3 2 23 589 611 589 611 0.93 15 17 0.049 8.6 8.8 6.4 1 23 618 641 618 641 0.96 16 17 2.5e-05 0.0043 19.2 2.7 2 23 648 669 647 669 0.96 17 17 0.00013 0.023 16.9 1.7 1 23 675 697 675 697 0.98
Sequence Information
- Coding Sequence
- ATGAAGAATCtctatatatgtttttattgcgAGCAGCAGTTTTCTGATCCGGAGAAACTAAGACTTCACCACGTAGAACATAGTTCCATTACGAATTCTCATATTAAACACGCGTTGTCGAAGCTCAGAAAATATGAATTGGTGAAGGTAGATGTAACAAATGTCAGTTGCAAGCTTTGTGATGACGAAATACCAGATTTCGTATCTCTAAAATGGCACTTGCTTGACAAACACAAGAAAAATTTAGACCCAAAATCAGCTGATGGAGTCTTACCATTTAAAGTAACTTTAGAAGAGTTTCAATGCGTATTATGTATAGAAAAATTTGGAGAATTCAAGTCGCTTAACCAACATATGAACGTGCATTTCCAGAACTTTATTTGTGAACAATGTGGTACTGGTTTTGTTACGCCCGAACGGTTAAGGACGCATGCTTTCTCTCACGAGACAGGTTCCTTTCCTTGCGAGAGCTGTGACAAAGTATTTCGCTCCACTAATGCTAAAAATGAACACTTCGCCACAGTACATATGAAGGTCAAGCGCCACAGATGTCCACAGTGCTCTGAGACCTTCAGAAACTACTTCCAACGCAACAAACACATATCCGCTATTCATGGCGTTAagttaaaagaatttaaatgcACCATGTGCCCGAAAGTCTTTACTTTAAGCGGGAAATTAGGCGTGCATGTGAGAACAGTACATTTAAAGATGAAGAGGCACGCTTGTGAGGTCTGTGAGTGGAAATTCTACTCGAAATCTGAGTTAAAGGAACACATGATAAGGCATGGCGGGGAAAGGAAGTTCCAGTGCGGGGTTTGCAAGAAGGCATACGCAAGAAAACATACGTTGAGGGAACACATGAGGATACATGAGAATGATAGACGTTTTGTGTGTGCAACGTGTGGATCCGACTCATCCATACCAGAAGTGAAGCGAAGAATTGTGCCGCTATTCCAAGTAGCATACGACAGAAGCTTATGTAGACCACTCGGCACCATAATCAACTTCAGTGCGCTCAAAAAGACATACAAATCGTTCTCAATAGACCCAACACCGTCCAGAAGTCCTTCACCTGTTTTCATGCCGAGATCGCCGTCACCGTATGTCGAGAGACCCGAATCTGTTGAGGTTATCCAGCCTAAAGTAAAGAAAGATCCTGATATACGACAAAATGCGCTGGCCGTCTTTGAATTCTCAACTGTATATCCCTTTGTCTATGGAAACAACAAGTTCAAATGTTTTGTCTGCTCgcaaccatttttggatctcaatgtgttaaaaatacatatgcgCGAAACACATACTTTCGCTCCATTAAAGAGATTAGTGAATAATAGGAGAGAGAACGTGTTAAAAGTCGATGTGAGTGATATTACTTGTAAAATATGTACGGCGAAGCCAGCAGATTTGGTGCAGTTAAAACGACATCTCAAAGAAGTGCATGGGAAACCAATCAACTTGGATCTTCAGGACAATTTGATACCATTCAAACTAGAGCTTATCGACGGGTCGTATAGATGCGTTATATGCGAGCAAAACTTTATCAAagtaagaatactagtaatacaTATGAGTGTTCACTTTAACAACTATAGCTGCGAGATATGTGGATCAGGGTTCATGACTCTCAGACTTCTTAAGAAGCACTTAGAAGTACACGAGAGTGGGAACTACCCGTGCGACCGCTGTAATAAAGCCTTCAGCACGCCTTACAAAAGAACTTTACACGTTCGAGGAGTTCACCTTAAACAGTATCCGAGAAGATGTCCTATATGTCCTGAAAGATTCAACTCGAATTATAAAAGGACTATCCATTTGCAAGATGTTCATAATCAGTCGACGAGGGTGCATAAATGTGAAACTTGCGGTCGAGGATTCAATTTGAAATACCATCTGATCTGTCATACCAGATCGGTGCATCTACAGGAAAGGAATCAACAATGCGAAGTCTGTCAGCAAAGGTTCTGTAATAAGGAATCGTTGAAGCGACATATGGTTATACATACTGGAGAGAAGAACCACAAGTGCGATGTGTGCGGTATGGCGTTTTTGAGAAGAAAGAATTTGAAGGATCATTTGCGGCTGCATAATATAGAATAG
- Protein Sequence
- MKNLYICFYCEQQFSDPEKLRLHHVEHSSITNSHIKHALSKLRKYELVKVDVTNVSCKLCDDEIPDFVSLKWHLLDKHKKNLDPKSADGVLPFKVTLEEFQCVLCIEKFGEFKSLNQHMNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCESCDKVFRSTNAKNEHFATVHMKVKRHRCPQCSETFRNYFQRNKHISAIHGVKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKMKRHACEVCEWKFYSKSELKEHMIRHGGERKFQCGVCKKAYARKHTLREHMRIHENDRRFVCATCGSDSSIPEVKRRIVPLFQVAYDRSLCRPLGTIINFSALKKTYKSFSIDPTPSRSPSPVFMPRSPSPYVERPESVEVIQPKVKKDPDIRQNALAVFEFSTVYPFVYGNNKFKCFVCSQPFLDLNVLKIHMRETHTFAPLKRLVNNRRENVLKVDVSDITCKICTAKPADLVQLKRHLKEVHGKPINLDLQDNLIPFKLELIDGSYRCVICEQNFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNYPCDRCNKAFSTPYKRTLHVRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCEVCQQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHNIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823274;
- 90% Identity
- iTF_00282646;
- 80% Identity
- -