Cmes052038.2
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010002030.1:23725-26748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00072 0.14 14.6 0.5 1 23 110 132 110 132 0.93 2 18 0.17 34 7.1 0.4 1 23 205 227 205 227 0.97 3 18 0.0011 0.22 14.0 0.2 1 23 231 253 231 253 0.95 4 18 0.051 10 8.7 0.4 1 23 258 281 258 281 0.91 5 18 0.0011 0.22 13.9 1.8 1 23 287 310 287 310 0.93 6 18 4e-05 0.0079 18.5 0.2 1 23 317 340 317 340 0.98 7 18 2e-05 0.0039 19.5 0.9 1 23 346 368 346 368 0.96 8 18 2.4e-06 0.00047 22.4 2.0 1 23 374 396 374 396 0.99 9 18 0.00053 0.11 15.0 6.7 1 23 402 424 402 425 0.95 10 18 0.071 14 8.3 1.4 1 23 540 563 540 563 0.95 11 18 0.4 79 5.9 0.1 2 23 588 610 587 610 0.92 12 18 0.22 44 6.7 0.1 1 23 634 656 634 656 0.96 13 18 0.00036 0.071 15.5 0.2 1 23 660 682 660 682 0.98 14 18 0.00012 0.023 17.1 0.5 1 23 687 710 687 710 0.96 15 18 0.0036 0.72 12.4 0.3 2 23 717 739 717 739 0.93 16 18 0.06 12 8.5 6.4 1 23 746 769 746 769 0.96 17 18 0.00025 0.049 16.0 2.0 2 23 776 797 775 797 0.96 18 18 0.00016 0.031 16.6 1.7 1 23 803 825 803 825 0.98
Sequence Information
- Coding Sequence
- ATGGCCCATGATCAGCCAAGGCAAGCCGTCGCCATTGTGGACAGGGGACAATGGTATACACCAGTATTCTGTATGGACAATGACACACGATTGGCTATTGTGGCGGGTAATCGCGATTTTGTCGGTTTTGTGGCACACTTCAAAGGAATAGGTGAAGCTCCCTCACCTGACAAGAATTTTGCTAAGGAAAATAACGGTGAAACGACGGCCCAGTTTGCAGAAAGAACGAAAAATTTCACAGACAACGATATTAAAGCTAGGAAACGACATGCAATTATACTTCTGGAATCTTCTCATATTTGTCCCTTTAGATGGATGAAGAATTTGTACATTTGCTTTTACTGTGATCGGCAATTCTCAGACCCTGTCAAGCTAAGGCTCCATAATCTTGAACATTCACTATTGAAAAGTTCTCAAGTAAAACATGCCATGTCAAAACTGAGGAAATACGAATTAGTGAAGGTAGATGTTACGGATGTTAATTGTAGACTTTGCGACGACGAAATTCCTGATTATCCATCGTTAAAATGGCATCTGCTTGACAAGCACAATAAACCTTTAGATCCCAAATCTGCTGATGGTATGCTACCATTCAAAGTTACTGCAAACGAGTTTCAATGTGTGTTATGTATAGAAAAATATGCGGAATTCAAGTCATTAAATCAACACATGAATATACATTTTCAGAACTTCATTTGCGAGCAATGTGGCACTGGATTTGTTACGCCCGAACGTTTGAGAACTCATGCGTTCTCTCATGAAACTGGTTCCTTCCCTTGTGATAGCTGCGATAAAATATTTCGTTCTACAAACGCAAAGAATGAACATTTTGCCACAGTTCATATGAAAGTGAAACGGCACAGATGTCCTCAATGTCCCGAGACTTTTAGAAACTACTTCCAACGAAACAAACATATTTCAGCAATTCATGGCGTGAAGTTAAAAGAATTTAAATGCACCATGTGTCCAAAAGTGTTTACATTAAGTGGTAAACTTGGTGTGCATGTCAGAACAGTTCATTTGAAAATGAAGAGACATGCATGTGAAGTCTGTGAATGGAAATTTTATTCGAAATCTGAATTAAAGGAGCACATGATAAGACATGGCGGGGAAAGAAAGTTTCAATGCGGTGTTTGCAAGAAAGCTTACGCAAGGAAACATACCTTGAGGGAACATATGAGGATACACGAGAATGATAGACGTTTCGTATGCGCTACATGCGGCACTTCTTTCGTGCAAAAATGTAGTTTAAAACATCATACCAAGATACATCATCCTAGTTTAGGACATAGATCCGTCTCGCCCATACCTGAATCGAAGCGAAGAATCGTGCCGTTATTTCAAGTGGCTTACGACAGAAGTCTATGTAAACCACTTGGCACGTTAGTGAACTTCAAGGCAATcaaaaaaacttacaaaaagATTACTAGACCTCAAACTCCGTCTCGAAGTCCTTCGCCTATATGTATACGAAGATCTCCATCTCCGTTCATTGAGGAAAGAGAATCCATTAAAACTGTTTATCCTAGACCCAAGAAAAATCCGGATATGAGACAAAATGCTCTGGCAGTGTTCGAATTCTCGACTGTATATCCTTTTGTGTATGgcaacaataaatttaaatgttttgtCTGCTCGCAACCCTTTTTGGACCTTCACCTGTTAAAGGAGCACATGAGCGAGAATCATACATTCGCTCCTCTCAAAAGACTAGTTAATAACCGAAGAGAAAATGTTTTAAAAGTCGATGTCAGCGATATTACTTGTAAAATATGTCAGGCCAAACCGATTGATTTAGTCCAGTTAAAACGTCATCTAAAAGAAGCTCACAGCAAATCAGTAAACTTGGATCTTCAAGATAATCTGATACCTTTTAAATTGGAATTAGTCGACGGGTCCTATAAATGTGTTATATGTGAAGagaatttcatcaaaatacgTATATTAGTTATCCATATGAGCgtacatttcaataactataGCTGCGAAATATGCGGCTCAGGTTTCATGACGTTGCGGCTTCTAAAGAAGCATTTGGAGGTCCACGAAACTGGTAACTTCCCATGTGACCGTTGTAACAAAGTTTTTAGCACCCCTTACAAAAGGACGTTGCACATTCGAGGTGTGCACCTTAAACAGTATCCAAGAAGATGTCCTATTTGTCCGGAAAGATTCAACTCAAATTATAAAAGGACTATTCATTTGCAAGATGTCCACAATCAGTCCACAAGAGTGCATAAGTGTGAGACATGTGGAAGGGGCTTTAATTTGAAGTATCATTTGATTTGTCACACAAGGTCTGTGCATTTACAAGAAAGAAATCAGCAATGCGCAATTTGTCTGCAAAGATTCTGTAATAAAGAGTCGTTAAAGCGTCATATGGTAATCCATACTGGAGAGAAGAAGCATAAATGTGACGTGTGCGGGATGGCGTTTCTGAGAAGAAAGAATTTGAAGGACCATTTGCGATTACATAACGGACAGTAA
- Protein Sequence
- MAHDQPRQAVAIVDRGQWYTPVFCMDNDTRLAIVAGNRDFVGFVAHFKGIGEAPSPDKNFAKENNGETTAQFAERTKNFTDNDIKARKRHAIILLESSHICPFRWMKNLYICFYCDRQFSDPVKLRLHNLEHSLLKSSQVKHAMSKLRKYELVKVDVTDVNCRLCDDEIPDYPSLKWHLLDKHNKPLDPKSADGMLPFKVTANEFQCVLCIEKYAEFKSLNQHMNIHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDSCDKIFRSTNAKNEHFATVHMKVKRHRCPQCPETFRNYFQRNKHISAIHGVKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKMKRHACEVCEWKFYSKSELKEHMIRHGGERKFQCGVCKKAYARKHTLREHMRIHENDRRFVCATCGTSFVQKCSLKHHTKIHHPSLGHRSVSPIPESKRRIVPLFQVAYDRSLCKPLGTLVNFKAIKKTYKKITRPQTPSRSPSPICIRRSPSPFIEERESIKTVYPRPKKNPDMRQNALAVFEFSTVYPFVYGNNKFKCFVCSQPFLDLHLLKEHMSENHTFAPLKRLVNNRRENVLKVDVSDITCKICQAKPIDLVQLKRHLKEAHSKSVNLDLQDNLIPFKLELVDGSYKCVICEENFIKIRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTPYKRTLHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCAICLQRFCNKESLKRHMVIHTGEKKHKCDVCGMAFLRRKNLKDHLRLHNGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823274;
- 90% Identity
- -
- 80% Identity
- -