Hcic008722.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- Arid2
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010000025.1:143969-156503[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 4.9e+03 -2.3 0.0 15 35 82 102 79 105 0.81 2 2 1.4e-14 6.1e-11 42.3 0.0 2 57 672 728 671 752 0.82
Sequence Information
- Coding Sequence
- ATGGCCACGATTCTCGGCAAGGACCCAGCCGTATACCCCAAGGAGCGAGACGGTTTCCTTCGGGATCTACAGCATTTCCACGAGACGCGCGGAACGCCGTTTCGAAGACCACCTATCATCGGTGGTAAAGAAGTCGATCTATATTTACTCTATAATTTGGTAATCAGTCAAGGTGGTTGGATCAAGGTAAATTCGAAAAATGGTTGGGTTGATGTTTTAGAAGAGTTAAACTTGCCGAAAGAATGTGTAAATGGTAGTGTTGCCTTAAAACAAATCTATTTAAGGTATTTAGATCGATGGGAGAAGGTGCATTTTCTTGGTGAAGAAGCTGATAGAGGTAGTGATGATGATGAAGAGAGTAGACATAAAAGATGGTCGGCTAGAGCTTTACATTCAGTACCCCTAACTTATAACTATACACAACATGCTATAGCCGATGTCAATAGAGAGTACAATCACTTATCCGCCGATTTGTATAAACCATCCGATTATGATAAACTAGCTTTATCACTTTTATCACCATTACCAAATGAACAAGATTTTGCTATAAATGTGTGTACATTATTATCAAATGATGGTAAACATACGTTAAAATTGGAAAAACATCCGCGATTAATTGATTATCTACTCGGTCATGCTGGTGTCTTTTGTCATAGCTCTCTTCGAAAGTTGTTTGTATATTGTTATCGGAATATCCGTAAACATTCAATTCATAGTTTTTGGAATGATGTACTCGAATCAAATGAATTTTTAGATCTCACAAATGAAGATAAATTTATTCGAACGAATAATTCTAAAATAGGTGAAATTAGTAAAGTTGATAATAATAATGTTGATGATGGTGGTGTGGAGGAAGAAACATCAAAAAGTGATATGGAAGTTGACGATGATGATGATGATGTTTGTGACATTTATAGTGTATTAGAGAAAGACAGTGATTTAAAAAATTTTAAAGATCGTTTACGTTTTAAAATAAAATTAAGTACAAGTGATAAAGAATTATTTTGTTTAGGCAGACAATTAGGTACACAAGATTATATTGGTCAACGTGTTTTACAAATAACAACAATTTTACGAAATCTTAGTTTTACAGAAGAGAATATACCAGTATTGTTGAAAAATCGAACATTTCTTAGGTTTTTATTATTATGTGCTTCCTCGCGTTGGGGTTATTTAAAAAATCTCGCCATGGACATGTTAGGTAATGTGGCTGGTGAAATTTTAATTAAAAATTATCCACACGACCGATTAGCTGTAGTTTTATTAAAAATTATAACAAATGGCCTAAAAAGTGAGGATAGAGCTGCTTGTATTACGTCACTTGAAGTATTAAATAAACTTAGTCAAAATGAATCGAATGAAGAAATATTATTAAAATATCTTGAAGTGGAAGTGTTTGAGAAAGTGTGTTCTTTTTTAACGATTCACGATGTTATGTTATTAATTTATACATTAGAATGTTTATATTCATTATCGTCTCTAGGTGAACGTTCTTGTAATTTAATTATAAGCAATCATGGTGTAGTGGATACTTTAGTGTCACTAGTTACTGTTGAAGGAAAAAGTTATGGTCCTAAAGCATGTATTGGTATGAAATTGGTTGAAACTGTACCAGGTGGGATTAGTACAACGACATCGACGACAACAGCAGCAACAACAACAACAACAACACAATCTAATTCAACTATTAGTAATACAACAATAACAACAACGGCGACAACAACAACAACAACATTAACAACAAATTCCAATTTCACAAATACATTATCATCTGCAATAATTACATCAAACAATTCAACATTATCAACTCCATCTGTTGCAATAAAAGTTTCGACAAATGTAACAACACCTGTACGAACTGTACAAGTAACACCACAACGTTTATTAAATATTTCACCATCACCAGCGGCATCATCTACAACTACAGCTAATATAACTCAATCACAATCAATGACACCACAACAATTAATACAACAACAACATGCCCATCAACAAGCTATTCATGAAAATGAACAATTCGCCTTAGCTTGGTTACGTGCCAATTATGAACCATGTACAAATAGTAAAGTTGATCATCAAGAATTATATAAGCAGTATTTAAATTCGTGTTCAAAAATTGGTAGAAGGGGTGTTATCTCCCCTTTGCATTTCCCAAGATGTGTACGGTCAGTATTTGGAGGTACAGTGGGTCCAAATCCGATGAAGTTGTCCAATTCGAATGAATCACAGTATTATGAAGGCATAAAGGTGCGATCTCAACCTCTCATAATTAATATCCAACCAAATTCCAATCCTAGTGTCACGCAGCCCATTTCAAAAGGACCAAATAATCGACGAAAATCATCGTCAACAACATCGACAACAACTACTACGACTACAACAACAACATCCACATCCTTATCAGTTGTTGCTGATAATAATAATACAATCAATGACCAATCACAATTGTCTCCTGCCTCACCTATCCTGAAGGCGCAGCTAAGTGCTCCTCCAAAACAGAGGGACACCACTGCACCTATCGGTAGTAAAGGCGATATCAAAAGCCAGGTGATGGCACATCCACATCTGAGTCAAGCTTTATTAGGAAATAATAATAGTACATCAAATTCTAATTTAAGTAAAGAGAATCAAACAGGTCAAAGCAATACGTCGTTGATCAAAAGTTTATTAGCAACAAAGGTAAACGATTGCATGACAACAGTGAGCATGAGGACTGCAACAGACTGCCAAAATGTAGCTCAGGTTGCAGCACGACAACAACAACAAAGACTTTTAGCTCAACAAGTGACAACACCGTCCATTTCAGTTGATACAAATAAAAATCTAACAAAATTAGATGCATGTAAAGCATCTCGAATAAATGGTGTTCGACAATTATTCGCCGACAGTGATAGTAAAAAGGAACCACCACAACCGCCACCCCCTCCTTTAGCACCGTTAAGTTCAACAACTCTATCATCAACATCAGCAACAACAACAACACCAACTATAGTAACAAAAGTGAAAACGAATCGTGTTGAAAATGAAGATAGTGATTCAACTGGTAATAATTCATTAGCATCTAGTTCAGGAATTGGTACAGTTGGTATTGGTGGTGTTTCATCAACTGAAGATGGTGATAATTCATTAACTAGTTTTGAAGGTTTATTAAATGGTGTACCAAATATTGACAATCCATTAAATGAAGATAGTAATTCCAAAGATTCTGTTAAAGTTGTTTGTAATGAAATAACGAAAAATCGTCCGTTACGATTGGCTGATTTATTAGAGAAGAAAATTGAAAAACCACCACCTTTATTGAATGGTAGTTTAGGTAAAGAATTGCGTTTAGGTGAGAAAACTTTGGATTTAGTTGAAAATCATATTGAGAAAGCCCTTAGTCGTGATAATGATAATAATTCGCATGATAATCACAATATTGATAAGAAAACAGAAACAACAAATAATAATGAAAATAAATTGAATTTAAAACGGCCAGCCTCGGATGATATTGTTGAATCGGAAGCAAAGAAACCAATGTTGAATGTTAACGGTTCTTCAAGTGCTGCAGATTCACCAGCTCCGGATTCTGTATCTAGTTCAAATGGTGATGAAGCTAATACGACTGTATCAACAGCAGCTGCGAAATTATTTGCTGATATTGCTGCTGATATTTTGGAAGATGAAGATGAAGAACAGTTGTTACAAGAAGCTCAACCACAACAACAACATCAACAGCAACAACAACAACAACAACAGACTGAAATTGCAGTTCCTCCTCCAGTATCCGGGACATCAGCGCCTGTTCAACAAATTATTGTCGATAATAATCAACAAGTATTATTAACACAACCTAGACAAATTATTGTAACACAATCACAAATCCAATCGAATGCTACAACAGCAGTTTTATCGACTGGTACGCCAATAAAAACACAAACTGGACAAACTGTAATTGTACAAAATTCCAATCAACAAAGAACACCAGTCGTCCTACAACCGAATACTGGTCAAATTCTATTATCACAAGGTATACAAGGGCAAGTACAATTAGTAGCTAGTACAACACAACCTGGCCAATATGTATTACAAACAAGTGGTACACAAAATGCTTATGTTGTGGCACAACCACAAACTGCAGTTGTACATGGACAACCGCAAACCGTTCTTGTTGCACAAACAGCCCAACAACAAGGTAGCGGTACAAAAACTATAATTATTTTACAACAACAAGCACCATCAACAACGGCTACACATCATCAAAAAGTTATGGTTACACCACAAGGTCAACAAGTTGTTGTAACACAAGTCCATCGACCGGTATTGCAAACATCAACTGTAACAAATAATATTATACCGGCTACATCTGTAATAAAAACAACACCAATTACAACTATTACAACACAAAATAATACAACAACAGTGAATGGTGTTGGTGGTAATAACGATAAGAAAATTGATGAAACTAAACCGAAAATTGTTCGAGATTTAACAACACCGTTTGTTTGCGAATGGGGTGATTGTAATATAGATACTAAATTTAAGTCAGCAAATCAGGTGTATTTGCATGTTTGTGAAGCACATTGTCCTAAAGGTACTGAAGAAATTGTTTGTCAATGGGAGCGCTGTGATAATATGAAAAGAAAAAGATTCTCATTGATGACACATCTACACGATAAACACTGCAATACAGAGGCTATGAAACAGAGTTTGACTAGAAGAAAACAAATCTCCCAAGGCGCTAAAGTTGACCCACCACCACCGACACCAACGACCCCCCATCCTGGTTATGCACCGGATGCTGCACTACATGCAATTAAACGGCATGCATTAGAATTTGTAAATCCGAAAGAATTGCAAGATGATAATGAAGGTCCAGTAACGAAAAGTATAAGGTTGACTGCATCTCTAATACTTAGGAATCTCGTTATTTACAGCAGTAACTGTAGAAGGTACTTAAAACATTATGAGCCCCATCTGGCGAATGTAGCCCTTAGTAATGTTGAATCGTCCCGGACGATAGCCCAAGTTCTTTATGATATGAATGAAGGGACGAATAGGTGA
- Protein Sequence
- MATILGKDPAVYPKERDGFLRDLQHFHETRGTPFRRPPIIGGKEVDLYLLYNLVISQGGWIKVNSKNGWVDVLEELNLPKECVNGSVALKQIYLRYLDRWEKVHFLGEEADRGSDDDEESRHKRWSARALHSVPLTYNYTQHAIADVNREYNHLSADLYKPSDYDKLALSLLSPLPNEQDFAINVCTLLSNDGKHTLKLEKHPRLIDYLLGHAGVFCHSSLRKLFVYCYRNIRKHSIHSFWNDVLESNEFLDLTNEDKFIRTNNSKIGEISKVDNNNVDDGGVEEETSKSDMEVDDDDDDVCDIYSVLEKDSDLKNFKDRLRFKIKLSTSDKELFCLGRQLGTQDYIGQRVLQITTILRNLSFTEENIPVLLKNRTFLRFLLLCASSRWGYLKNLAMDMLGNVAGEILIKNYPHDRLAVVLLKIITNGLKSEDRAACITSLEVLNKLSQNESNEEILLKYLEVEVFEKVCSFLTIHDVMLLIYTLECLYSLSSLGERSCNLIISNHGVVDTLVSLVTVEGKSYGPKACIGMKLVETVPGGISTTTSTTTAATTTTTTQSNSTISNTTITTTATTTTTTLTTNSNFTNTLSSAIITSNNSTLSTPSVAIKVSTNVTTPVRTVQVTPQRLLNISPSPAASSTTTANITQSQSMTPQQLIQQQHAHQQAIHENEQFALAWLRANYEPCTNSKVDHQELYKQYLNSCSKIGRRGVISPLHFPRCVRSVFGGTVGPNPMKLSNSNESQYYEGIKVRSQPLIINIQPNSNPSVTQPISKGPNNRRKSSSTTSTTTTTTTTTTSTSLSVVADNNNTINDQSQLSPASPILKAQLSAPPKQRDTTAPIGSKGDIKSQVMAHPHLSQALLGNNNSTSNSNLSKENQTGQSNTSLIKSLLATKVNDCMTTVSMRTATDCQNVAQVAARQQQQRLLAQQVTTPSISVDTNKNLTKLDACKASRINGVRQLFADSDSKKEPPQPPPPPLAPLSSTTLSSTSATTTTPTIVTKVKTNRVENEDSDSTGNNSLASSSGIGTVGIGGVSSTEDGDNSLTSFEGLLNGVPNIDNPLNEDSNSKDSVKVVCNEITKNRPLRLADLLEKKIEKPPPLLNGSLGKELRLGEKTLDLVENHIEKALSRDNDNNSHDNHNIDKKTETTNNNENKLNLKRPASDDIVESEAKKPMLNVNGSSSAADSPAPDSVSSSNGDEANTTVSTAAAKLFADIAADILEDEDEEQLLQEAQPQQQHQQQQQQQQQTEIAVPPPVSGTSAPVQQIIVDNNQQVLLTQPRQIIVTQSQIQSNATTAVLSTGTPIKTQTGQTVIVQNSNQQRTPVVLQPNTGQILLSQGIQGQVQLVASTTQPGQYVLQTSGTQNAYVVAQPQTAVVHGQPQTVLVAQTAQQQGSGTKTIIILQQQAPSTTATHHQKVMVTPQGQQVVVTQVHRPVLQTSTVTNNIIPATSVIKTTPITTITTQNNTTTVNGVGGNNDKKIDETKPKIVRDLTTPFVCEWGDCNIDTKFKSANQVYLHVCEAHCPKGTEEIVCQWERCDNMKRKRFSLMTHLHDKHCNTEAMKQSLTRRKQISQGAKVDPPPPTPTTPHPGYAPDAALHAIKRHALEFVNPKELQDDNEGPVTKSIRLTASLILRNLVIYSSNCRRYLKHYEPHLANVALSNVESSRTIAQVLYDMNEGTNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022006;
- 90% Identity
- iTF_00813501;
- 80% Identity
- iTF_00813501;