Basic Information

Insect: Hirtodrosophila trivittata
Gene Symbol: -
Assembly: GCA_035045065.1
Location: JAWNNK010000855.1:3167702-3170902[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2e-05 0.0017 19.0 4.8 1 23 173 196 173 196 0.97

2 16 0.0017 0.14 12.9 2.9 1 23 248 271 248 271 0.96

3 16 0.004 0.33 11.8 3.2 1 23 338 361 338 361 0.97

4 16 0.0083 0.69 10.8 0.4 2 23 413 434 412 434 0.96

5 16 2.9 2.4e+02 2.8 0.7 1 20 547 566 547 568 0.75

6 16 0.036 3 8.8 0.3 1 23 577 599 577 599 0.94

7 16 0.00029 0.024 15.4 2.1 1 23 606 628 606 629 0.95

8 16 0.00046 0.038 14.7 1.4 2 23 637 658 636 658 0.96

9 16 0.018 1.5 9.7 0.1 3 22 686 705 684 708 0.88

10 16 0.0054 0.45 11.4 1.4 1 23 745 768 745 768 0.96

11 16 2.1 1.8e+02 3.2 2.6 1 22 775 796 775 796 0.95

12 16 0.0076 0.64 10.9 1.8 1 23 805 828 805 828 0.97

13 16 1.6e-05 0.0014 19.3 0.5 1 23 847 870 847 870 0.97

14 16 0.038 3.2 8.7 0.2 1 23 880 902 880 902 0.94

15 16 2.5e-05 0.0021 18.7 3.3 1 23 908 930 908 930 0.99

16 16 5.2e-05 0.0044 17.7 0.9 1 23 936 958 936 958 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2e-05	0.0017	19.0	4.8	1	23	173	196	173	196	0.97
2	16	0.0017	0.14	12.9	2.9	1	23	248	271	248	271	0.96
3	16	0.004	0.33	11.8	3.2	1	23	338	361	338	361	0.97
4	16	0.0083	0.69	10.8	0.4	2	23	413	434	412	434	0.96
5	16	2.9	2.4e+02	2.8	0.7	1	20	547	566	547	568	0.75
6	16	0.036	3	8.8	0.3	1	23	577	599	577	599	0.94
7	16	0.00029	0.024	15.4	2.1	1	23	606	628	606	629	0.95
8	16	0.00046	0.038	14.7	1.4	2	23	637	658	636	658	0.96
9	16	0.018	1.5	9.7	0.1	3	22	686	705	684	708	0.88
10	16	0.0054	0.45	11.4	1.4	1	23	745	768	745	768	0.96
11	16	2.1	1.8e+02	3.2	2.6	1	22	775	796	775	796	0.95
12	16	0.0076	0.64	10.9	1.8	1	23	805	828	805	828	0.97
13	16	1.6e-05	0.0014	19.3	0.5	1	23	847	870	847	870	0.97
14	16	0.038	3.2	8.7	0.2	1	23	880	902	880	902	0.94
15	16	2.5e-05	0.0021	18.7	3.3	1	23	908	930	908	930	0.99
16	16	5.2e-05	0.0044	17.7	0.9	1	23	936	958	936	958	0.98

Sequence Information

Coding Sequence: ATGACAAGAACATGCAGAATATGTGGAGGTGCAGATGGACGTTATTGGATTGAGACACAACTCGATAAACATGCAGAGAAAACATTTAAGCAAGTGCTGCTGGAGCTCACCAGGCTTGAGGTTGCATTAGAGCAAGCTGACAAGTTGCCCCCTTGGCTTTGTCGTACATGTGCACAAAAATTGAGAAGTGCCTATGAGTTTGTCCTGCAGGCGCGCCAAACTCACGAGCACTGGCTGCAAAATATGTCAACAGAAGGTGCACTAGACGATAATGAAATGGGTACCCTGGAATGTCTTCGTGAGACACCAATACAAATGCTTGAGATAGAAggattgcaaattaaaatggaaGAGCCATCAGAGCCTGCTTTACCCCAAGCTGACCCAACCCACTCAGTTGATCCACTGATTAAGAAAAATAGTTGCAACGAcatcgatgatgatgataatgaagatgacgatgacgatgtcCCTCTCAAGCAACGCAAGGGAATGATTTCAAAATTACCAATACTACATAAGTGTAATAAATGCGATAAAGCATTCAAATACGTATCGAATCTCTTCAGGCACAAGCAGCGAGACCACGGTCCAGCGTATTGTAGGACAAAATCGCAGTCAGTGGATAACAACTCAAAGACTGACAGCTCAGAACAATTCCTAATtagccaaacaaacaatttcattcCCGCCCGGAGCAGCACAGGCTCAGATTCAGATAATGAATCAGCGGATAACTACTACAGGTGCGATCAATGCGATAAATCCTACAAGTACATAATGCTGCTaatcaaacacaaacacaaagcacATGGCGTCAACCAGTTGCCAGCAGAACCAAGACCAATAAGCGGATGTGATCTGAGCACAGAACAAACTTCAGTATTAAGACAAGACCGTTGTCAGCGGTCTAAGCCGTATAGTACATCCAGTACAGATTCCCTGGTTTATACTATAATCAAAGAAGTGAAATTACCTGACGAGGATGACAACACAGGCTCAGATAATTACTACAAGTGCGACCAATGTAAAAATTCTTATAAATACATTGTGAGTCTCATCAAGCACATGCACAAGGAGCACAATGCCTACAACGAATCTGACGAAGGCGAAGAGGATGCTATGCCATCTAAATATACAACTGGAACATCTTCAATGTCAAAGCCTTCCCGCATTGATAGACGTGTAAAGGGATTCGACTTAAATCGCTGCAAACCGAATGGCTCCAAGGAGATTCAATGCATGATCTGTTTGCGCAGGTTTATCAAACTAAGAGAATTGCGTGAACATTTGAAAGCTCACCCCACAGACTTTACATTCGACGCTCATGGCGAGCCCATTGAGCGCCTTGCCGAAGGATTTTACAAGACAGCTGTGGAGTCAACGGCTGCTGGTTTGAAGAACCGCATTCTCAATGATCTCAAACTTGGATTGTTTGGACGCTACTACTCCATAACTAATGAGGCGCGGTATGAGATGAATCTGGACAGCTCGGATACAGACAGTGACGGTGAAGCGGATGTGGTGGAGCGGCGCAGTTATTCATGTGAGCTATGCGATTCCTCCACCGCCGTGTGGCCACGCAAATATCAGCTGTATGAGCACCACCGAAAGCAGCACACCTGGTTGGAGGCACCATACGTCTGTCAGCGGTGTGACTCACGATTCCTGAGCGCTCAGTTGCTGGATCATCATACACAAAAATTATGTCAGAATACCTTAAAGCGCTTTATGTGCGACAAGTGTCCACAGCGCTTTTTTTGGCGCCCCAATTTACGCGCTCATCTCGTTGAGCACAAAAATAAGCAAGAGAACTACCCATGTGACCAGTGTTCGCGGAGTTTTCAGGATAAGAGTGCCGTGACAAAGCACAAACTAATGCATCACGTTGCCGGCAACCAGCTGCTGCCTTGCCGCTGGTGCACACGAACCTTTTATCGCCCAGCACTTTTACACAAACATGTTCAGCGTCACGGTTTCAGTGGCGAGGACCTCCCACTGGCAGAGACACTTCTCGCGGATGCCGCTAAGCCATCTGGGCCTAAAACAATCATTTGCAAACTGTGCAACATGCAGTTTGTCAGTATTGGTGATCTGCGACGGCACAATGAGACGCAAGCACACGTTGAGCAGGTCTCAAactatatgataagcacaaaGGAGGGTTTCGAGCTACAGCTGGATGAAACGGACGATAGCGATGATGAGACAACTGGATCTACTGGCAGATCATACAAATGTGATCTTTGCGAGATGACATTCCAACGGCGGCGCGATATGAGCGAGCATCAGTATTCCTTGCACACTTTTGACAAGCTACCGCATTCCTGTGACCATTGCATTTTTAAGACCGTCGACAGGAACATGCTGGAGCACCATCTTCGGACGCAGTGCTTGAACCAGGACAAGAAATTCAACTGCACCCGATGTGGCTACAAGTTTATGTGGCACGAAAATTTGGAACAGCACATGGCTACACAACATGCTAAGGCCACTAATCAGACACCGGTTGCTGCAAAGAGAAGTAGACGGTTTAGATACCAGTGTCCGCACTGCTGGCGTTCTTTTGTAGTGCAACCCAGCCTCGACAAGCACATACGCGACATGCATGTAGCCAAAAAAAATCCAggaaaaaagtatctttgcTCACTATGCGGCCTGGAATCGCTGACACCTAACAAGCTCAACATCCATATGCGTCGGCACAACGGAGAGAAACCATTCAAATGCGATCTGTGTGATATGTCCTTTACAGTACATTACGAGTTAAAGGTTCATCGTCGAAAACACACAGGTGAACGGCCATATCAATGTACATTCTGTGCCAAGGACTTCGCAAGACCGGATAAGCTTAGGCGACATGTTTACATGCATAGCGTAAAGCGTTAA
Protein Sequence: MTRTCRICGGADGRYWIETQLDKHAEKTFKQVLLELTRLEVALEQADKLPPWLCRTCAQKLRSAYEFVLQARQTHEHWLQNMSTEGALDDNEMGTLECLRETPIQMLEIEGLQIKMEEPSEPALPQADPTHSVDPLIKKNSCNDIDDDDNEDDDDDVPLKQRKGMISKLPILHKCNKCDKAFKYVSNLFRHKQRDHGPAYCRTKSQSVDNNSKTDSSEQFLISQTNNFIPARSSTGSDSDNESADNYYRCDQCDKSYKYIMLLIKHKHKAHGVNQLPAEPRPISGCDLSTEQTSVLRQDRCQRSKPYSTSSTDSLVYTIIKEVKLPDEDDNTGSDNYYKCDQCKNSYKYIVSLIKHMHKEHNAYNESDEGEEDAMPSKYTTGTSSMSKPSRIDRRVKGFDLNRCKPNGSKEIQCMICLRRFIKLRELREHLKAHPTDFTFDAHGEPIERLAEGFYKTAVESTAAGLKNRILNDLKLGLFGRYYSITNEARYEMNLDSSDTDSDGEADVVERRSYSCELCDSSTAVWPRKYQLYEHHRKQHTWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRPNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMHHVAGNQLLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKPSGPKTIICKLCNMQFVSIGDLRRHNETQAHVEQVSNYMISTKEGFELQLDETDDSDDETTGSTGRSYKCDLCEMTFQRRRDMSEHQYSLHTFDKLPHSCDHCIFKTVDRNMLEHHLRTQCLNQDKKFNCTRCGYKFMWHENLEQHMATQHAKATNQTPVAAKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00558086; iTF_00510697; iTF_00537669; iTF_00803017; iTF_00608603;
90% Identity: -
80% Identity: -