Basic Information

Insect: Hirtodrosophila alboralis
Gene Symbol: -
Assembly: GCA_035043045.1
Location: JAWNNH010000375.1:88925-92117[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.3e-05 0.0064 17.0 5.0 1 23 169 192 169 192 0.97

2 16 0.0024 0.16 12.6 3.6 1 23 244 267 244 267 0.96

3 16 0.00068 0.047 14.3 3.3 1 23 331 354 331 354 0.96

4 16 0.0061 0.42 11.3 0.7 2 23 407 428 406 428 0.96

5 16 6.4 4.4e+02 1.8 1.6 1 21 541 561 541 562 0.81

6 16 0.021 1.5 9.6 0.6 1 23 571 593 571 593 0.94

7 16 0.00031 0.021 15.4 2.1 1 23 600 622 600 623 0.95

8 16 0.00049 0.034 14.7 1.4 2 23 631 652 630 652 0.96

9 16 0.0024 0.17 12.6 0.8 3 23 680 702 679 702 0.91

10 16 0.0023 0.16 12.7 1.3 1 23 739 762 739 762 0.96

11 16 0.7 48 4.8 1.2 1 21 769 789 769 790 0.95

12 16 0.001 0.071 13.7 1.4 1 23 799 822 799 822 0.98

13 16 1.7e-05 0.0012 19.3 0.5 1 23 840 863 840 863 0.97

14 16 0.33 23 5.8 0.2 1 23 873 895 873 895 0.93

15 16 2.7e-05 0.0018 18.7 3.3 1 23 901 923 901 923 0.99

16 16 5.6e-05 0.0039 17.7 0.9 1 23 929 951 929 951 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.3e-05	0.0064	17.0	5.0	1	23	169	192	169	192	0.97
2	16	0.0024	0.16	12.6	3.6	1	23	244	267	244	267	0.96
3	16	0.00068	0.047	14.3	3.3	1	23	331	354	331	354	0.96
4	16	0.0061	0.42	11.3	0.7	2	23	407	428	406	428	0.96
5	16	6.4	4.4e+02	1.8	1.6	1	21	541	561	541	562	0.81
6	16	0.021	1.5	9.6	0.6	1	23	571	593	571	593	0.94
7	16	0.00031	0.021	15.4	2.1	1	23	600	622	600	623	0.95
8	16	0.00049	0.034	14.7	1.4	2	23	631	652	630	652	0.96
9	16	0.0024	0.17	12.6	0.8	3	23	680	702	679	702	0.91
10	16	0.0023	0.16	12.7	1.3	1	23	739	762	739	762	0.96
11	16	0.7	48	4.8	1.2	1	21	769	789	769	790	0.95
12	16	0.001	0.071	13.7	1.4	1	23	799	822	799	822	0.98
13	16	1.7e-05	0.0012	19.3	0.5	1	23	840	863	840	863	0.97
14	16	0.33	23	5.8	0.2	1	23	873	895	873	895	0.93
15	16	2.7e-05	0.0018	18.7	3.3	1	23	901	923	901	923	0.99
16	16	5.6e-05	0.0039	17.7	0.9	1	23	929	951	929	951	0.98

Sequence Information

Coding Sequence: ATGACAAGGACATGTAGAATCTGCGCTGGTGCAGATGGACGTTATTGGATTGACACTCCGGTCAATAAATACGCAGAGAAAACATTTAATCAACTGCTGCTGGAGCTAACCAGACTTGAGGTTGCCTTGGATCAAGCAGACAAGCTGCCACCTTGGCTTTGTCGCAGCTGTGCTCAAAAATTACAGGATGCCTATGACTTTGTACAGCAAGCGCGCGAAAATCATGTACGCTGGCTACAAAAGCTCTCCACAGAATCTTCTGTGGGGGATACGGAAACAGGCACTTTGGAATGCCTTCGGGAAATGCCTATACAATTGTTAGAGATTGAGGgagtaacaattaaaatggaaGAGCCATCAGAACCTGCAATTCCGCAATCCGACCCAACTAGCTCGGTCGATCCCTTGGTTAAGAAGAACATATTGGATGATGGcagcgatgatgatgatgacgatgtaCCACTCAAGCAACGCAAGGCAGCCGTTACAAAATTGCCAATGCTACACAAGTGTAATAAATGCGATAAGGCCTTTAAATATGTTACCAATCTCTTCCGGCACAAGCAACGAGATCACAGTCCAGAGAAATACAAAACGAAAGCTAAGTCAGCAGAGGATAATACACAAATTGAGCGCCAGGAACCATTTCTACAGAACCTTCTAAAGAGTGCTATTACAGCCCGGCGAATTGCCAGTCCAGAGTTAGATAGTGAAACGCCAGATAACTACTATAAGTGCGATAAGTGCGACAAATCCTATAAGTTCATAATGTTACTTATTAAGCACAAGCATAAGGCACATGGCGCTAACCAAGTGCCAGTAGAACCAAGACCAATAAAACGAGGTGAATCGAGTACAGAGCAAACGCCTAAGCTAAGAACAACTCAGCGTTCTAAGCCACCCAGTACAGATTCCTTGGTGCATAGTCTAATCAAAGAGGTGAAcATTCCTGACGAGGACGATCTAGATAGTACAAGTGCAgataattattacaaatgcGATCAGTGTGACAAGTCATACAAATACATTGTGAGTCTCATTAAGCACAAGCATAAGGAGCATAATGCGTACAAAGATTCTGATGATGATGCAGTTGATGAAGCTACGCCATCCAGATATGCAACAGCATCAAGTTCAATGTCAAAACCTTCACGCATTGATCGACGCGTAAAAGGCTTCGATTTGCATCGTTGCAAAGCAAATGGTTCCAAAGAGATTCAATGCATGATATGTCTACGCAGATTTATCAAACTGAGAGAGTTGCGGAATCATCTTAAAGACCATCCCAAAGACTTTACATTCGATGCGCATGGCGAGCCAATTGAGCGACTGGCCGAAGGCTTTTATAAGACCGCTGTGGAGTCAACGGCTGACGGTTTGAAACAGCGCATACTCAATGATCTCAAGGTTGGCATGTATGGCCGCTACTACTCCATAACTAATGAGGCACGATATGAGATGAATCTCGACAGTTCGGACACAGATAGCGATGGTGAGGCAGATGTTGTACAGAGGCGTATCTATGCCTGTGAGCTGTGCGATTCGTCAACCGCCGTATGGCCACGAAAATATCAGTTGCATGAGCACCACCGACAACAGCACACTTGGCTAGAGGCCCCACATGTTTGTCAGCGTTGTGACTCACGTTTCCTGAGCGCCCAGCTGTTGGATCATCATACGCGAAAACTATGTCAGAATACCCTAAAGCGTTTTATGTGCGACAAGTGTCCGCAGCGTTTCTTTTGGCGACGCAATCTACGTGCACATCTCGTGGAGCACAAAAACAAGCAAGAGAATTATCCGTGTGATCAGTGCTCGCGCAGTTTCCAGGATAAGAGCGCCGTAACTAAGCACAAGCTAATGCATCACGACGGCAACAACGAACTGTTGCCCTGCCGCTGGTGTACTCGCACCTTTTATCGGCCAGCATTGCTGCACAAGCATGTGCAGCGTCACGGCTTTAGCGGCGAGGACTTGCCTCTGGCAGAGACACTGCTAGCGGATGCCGCCAAATCAACCGGACCTAAGACAATCCTATGCAAACTATGTAATATGCACTTTGTTAGTATTGCTGATCTGCGACGACATATGTCAATGCAGGCGCACAGTGAGGATGGCTCCAATTATATGATAAGCACAGAGGATGGTTTCGAGCTGCAGCTGGATGAAACGGACGATAGCGATGATGACACTGCTGTTTCTGCTGGCAGATCTTATAGGTGTGATCTATGCGATATGACCTTCCAGCGCCGGCGCGACATGAGCGAACATCAATATTCCTTACACACCTTTGACAAGTTGCCGCATTCCTGTGaacattgcatttttaaaagcgTCGACAAAAACATGTTGGAGCGACATCAGCGTGCTCAGTGCTTGAACCAAGAGAAGAAATTCAGGTGCTCACGTTGTGGTTACAAGTTTATGTGGCGTGAAAATCTGGAACAACATATGTCTACACAGCATGCTAAATCCAATCAGACGCCCGTTGCCACCAAGAGAAGTAGGCGTTTTAGATACCAGTGTCCGCATTGCTGGCGTTCTTTTGTTGTGCAGCCCAGCTTGGACAAGCATATACGTGACATGCATGTTGCCAAAAAGAATCCAGGCAAAAAATATCTGTGCTCACTTTGCGGCCTGGAGTCGCTCACCCCCAACAAGCTTAGCATACACATGCAGCGTCACAATGGcgaaaaaccatttaaatgcGATCTTTGCGATATGTCATTTACCGTACACTACGAGCTAAAAGTGCATCGCCGTAAACATACGGGCGAGCGACCCTATCAGTGCACATTTTGTGCCAAGGACTTTGCTAGACCGGATAAACTAAGGCGACATGTTTATATGCATAGCGTGAAGCGTTAA
Protein Sequence: MTRTCRICAGADGRYWIDTPVNKYAEKTFNQLLLELTRLEVALDQADKLPPWLCRSCAQKLQDAYDFVQQARENHVRWLQKLSTESSVGDTETGTLECLREMPIQLLEIEGVTIKMEEPSEPAIPQSDPTSSVDPLVKKNILDDGSDDDDDDVPLKQRKAAVTKLPMLHKCNKCDKAFKYVTNLFRHKQRDHSPEKYKTKAKSAEDNTQIERQEPFLQNLLKSAITARRIASPELDSETPDNYYKCDKCDKSYKFIMLLIKHKHKAHGANQVPVEPRPIKRGESSTEQTPKLRTTQRSKPPSTDSLVHSLIKEVNIPDEDDLDSTSADNYYKCDQCDKSYKYIVSLIKHKHKEHNAYKDSDDDAVDEATPSRYATASSSMSKPSRIDRRVKGFDLHRCKANGSKEIQCMICLRRFIKLRELRNHLKDHPKDFTFDAHGEPIERLAEGFYKTAVESTADGLKQRILNDLKVGMYGRYYSITNEARYEMNLDSSDTDSDGEADVVQRRIYACELCDSSTAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDSRFLSAQLLDHHTRKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMHHDGNNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKSTGPKTILCKLCNMHFVSIADLRRHMSMQAHSEDGSNYMISTEDGFELQLDETDDSDDDTAVSAGRSYRCDLCDMTFQRRRDMSEHQYSLHTFDKLPHSCEHCIFKSVDKNMLERHQRAQCLNQEKKFRCSRCGYKFMWRENLEQHMSTQHAKSNQTPVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMQRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00806138;
90% Identity: -
80% Identity: -