Hsem006519.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000032.1:168377-179289[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.092 2.1e+03 -2.0 1.0 46 87 50 93 28 98 0.53 2 3 6.4e-77 1.5e-72 244.8 24.6 1 268 109 370 109 389 0.89 3 3 1 2.3e+04 -7.0 16.8 1 49 390 437 390 468 0.69
Sequence Information
- Coding Sequence
- ATGGCCAAGAGATCGGAGTTCGCAACTCCTGAAAATAGCGATGAAGATAGTGGTGATGCGTTTACAGACGGTGATTTTGAGGATTCCGATGATGAGACTATAATTGAACGTAAAGGCTTCAAGGCTCAAGTTACCGAAACTGTGAATAAAAATGTTACGGACGAATCAAATAGCAATACAGAAGGAACAGTGAACGGCCACACAATGAAGATTAATGCGAGTCGTGCTGATTATGAAGATGTAAGCAATCAGAGTAATGGTGAAGATTCTCAAAGCGACTGCAATGGCTCTATTGTCGGAATACTCGGCGGTCAACAGAATCACGCGGAGCAGCGACTGGCGGCGCGGCGTGCGGCGCGTGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAAGAGGACCATGCCGACAAGGCGTATGACATGTATTCGGAGACAGTGGGGCGACGCGCAGGCGGCCGGCTAGCGGCGCTCAGCCCCAGCGCAATGCATTCCCCGCGACGCAGTTCAGAAGACTCGGACGACGTGCTCAGCATCAAAGACCTCAGGCATGAGCTCAAAGAAGTTGAAGAGAAGTTCCGGAAGGCGATGATACTGAATGCGCAGCTGGACAACGATAAAGCGGCGCTCGGCTACCAGCTGGAACTTCTCAAGGACAGGATAGAGGAGCTGCAAGAGGAGTACGCGCAACTGCAGCGCGAACACAGAGAGAAGTGCTCATGTTACGAGAGGTTAAAGCGCGAGCACGCGGCGCTGGAGCGCGAGGTGACGCTCGCGCGGGACGCGGTGCGCGCGCGGGacgcggcggccgcggcggcgggACGCGCGTTCGTGGAGGCGGCCAGCGCGCCGGACGCGGACGCGGGCGAGGCGTGCGGCAGCGTGCCCCCCCTGGCGCTGGTGTCGCACGAGTCTGAACAGTTGCTGAACGAAGCGGGCGAGGGGACACTCGACGTACGGCTGGAGAGGCTGGTCGGCGCCAAGGCGGCGCTAGAGAGCGAAGTGCGTAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGGCAAAACGGCGTCGCCTCGCATCTGGACCGCGACCACGACACCGAATTGGAGACACTACGCAAGTCTGTGACCGAGGCGAAAGGACGAGCGGCTCGCGCCGAGGCCGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGCCTCGAGGCGCAGGTGGCGCGGCTGCGCGCGAGGCAGGACCACCAGGACGAGCACGAGGAGATGCTGAAGCAGGAGCGGAGGAAGCTGCAGAGAGAGGCGCGGGAAGCTCTCAACCGGGTGGAAGAATTGGAGACGGAGAACAGCCATCTCACGAAGCGGCTCGATAAGCTCAAGAACGCTAAATCCGCGCTGCTGAAGGACCTGTGA
- Protein Sequence
- MAKRSEFATPENSDEDSGDAFTDGDFEDSDDETIIERKGFKAQVTETVNKNVTDESNSNTEGTVNGHTMKINASRADYEDVSNQSNGEDSQSDCNGSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSETVGRRAGGRLAALSPSAMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHREKCSCYERLKREHAALEREVTLARDAVRARDAAAAAAGRAFVEAASAPDADAGEACGSVPPLALVSHESEQLLNEAGEGTLDVRLERLVGAKAALESEVRKLKLQLNDERAARQNGVASHLDRDHDTELETLRKSVTEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021247;
- 90% Identity
- iTF_00953528;
- 80% Identity
- -