Hcom015415.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905404135.1
- Location
- FR990018.1:19309549-19313288[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-49 3.3e-45 155.4 9.2 84 265 30 226 19 248 0.86 2 2 2 3.1e+04 -5.8 18.7 1 44 249 292 249 322 0.70
Sequence Information
- Coding Sequence
- ATGTACCACAAAGACTTTATTGTACTCGTAGACACACAAATTACACGATTTTATCGTAATCCACGTTCGCCGCAAGTCAATGAATGTTGTTCTGACCTATTCCAGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCCATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGGCCTACCAGCTCGAGCTGCTCAAGGACCGCATCGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGTGAACACAAAGAGAAGTGCTCGTCCCACGAGCGCTTGAAGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGGGCGCGCGGGACGCGGTGCGCGCGCGGGACGCCGCCGCCGCCGCCGCGGGCCGCGCCTTCGTGGAGGCCGCCACGCTGCCCGCCGGTGGTGACCCCGTCGGTGACGGTGGTGACCCCGACCCGCCCGGCGTCGGCCAGGGCTTCGGCTCCGTGCCGCCGCTCGCACTCGTCTCGCACTCCTCCGAGCAGCTGCTCAACGATGCTGGCGAGGGGACACTCGACGTACGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGAGGAGCGCGCCGCGCGCCAGAACGGCGTGGCCGCGCACCACGACCGCGACCACGACACCGAGTTGGAAACCCTCCGCAAGTGCGTGTCAGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGGCGGCGGCGGGCGCGGCGCGGCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCGCGAGGAGCAGCTCAAGGTGGAGCGCCGCCGGCTGCAGCGGGAGGCGCGGGAAGCGCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MYHKDFIVLVDTQITRFYRNPRSPQVNECCSDLFQHELKEVEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDAVRARDAAAAAAGRAFVEAATLPAGGDPVGDGGDPDPPGVGQGFGSVPPLALVSHSSEQLLNDAGEGTLDVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHDTELETLRKCVSEAKGRAARAEAEAALAAAGAARLEAQLARLRARQDHQDEREEQLKVERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491956;
- 90% Identity
- iTF_00166935;
- 80% Identity
- -