Basic Information

Insect: Hemistola chrysoprasaria
Gene Symbol: -
Assembly: GCA_947063395.1
Location: OX346721.1:2377078-2379301[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2e-06 0.00025 22.0 1.7 1 23 226 248 226 248 0.98

2 9 3e-08 2.4e-06 28.3 1.6 3 23 256 276 254 276 0.98

3 9 0.0001 0.0083 17.2 0.3 1 23 282 304 282 304 0.98

4 9 1.1e-05 0.00089 20.3 1.7 1 23 310 332 310 332 0.99

5 9 2.3e-05 0.0018 19.3 1.7 2 23 434 455 433 455 0.96

6 9 2.9e-09 2.4e-07 31.5 1.6 1 23 461 483 461 483 0.98

7 9 0.0025 0.2 12.9 0.6 3 23 491 511 489 511 0.97

8 9 6.4e-05 0.0051 17.9 1.5 1 23 517 539 517 539 0.99

9 9 0.02 1.6 10.0 0.8 1 23 545 569 545 569 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2e-06	0.00025	22.0	1.7	1	23	226	248	226	248	0.98
2	9	3e-08	2.4e-06	28.3	1.6	3	23	256	276	254	276	0.98
3	9	0.0001	0.0083	17.2	0.3	1	23	282	304	282	304	0.98
4	9	1.1e-05	0.00089	20.3	1.7	1	23	310	332	310	332	0.99
5	9	2.3e-05	0.0018	19.3	1.7	2	23	434	455	433	455	0.96
6	9	2.9e-09	2.4e-07	31.5	1.6	1	23	461	483	461	483	0.98
7	9	0.0025	0.2	12.9	0.6	3	23	491	511	489	511	0.97
8	9	6.4e-05	0.0051	17.9	1.5	1	23	517	539	517	539	0.99
9	9	0.02	1.6	10.0	0.8	1	23	545	569	545	569	0.95

Sequence Information

Coding Sequence: ATGCAGCCACACGAACAGTTAACTAATAAAGTTGTATTGTTTCCAGATACGACAGCGCCGTACGTGCTATACAAGGATGGCGTGGAGCGAGCTCCTCCTGGCACGCAGTGGGGCGGCACGGTGCTGGACGGCGGCTACCAACCCATGCAACACCAGAGCCCAGGCGGGCCTTCACCGCAGCCCGAGCCTCAGCTCGCATCACCTGCACCCTCGCCTTATCCACCCGCACCACCACCTGACCCCACCGCCCCACCTGACGACCCAGCGCAACAATTAgctcaacaacaacaacagcagcagcagcagcaacaACAGCAACAACAgcagcaacaacaacaacaaaccTCCCCGGAGCACATGACCGTTGAACAACAATTACAGTCTCAACCGCAGCAAGCGCCGACACAGGACCATCTCGACCGAACGCCATGCTTCGTCCCGCAGCCCGACCTCCAGCAACAGTACACTCCATACTTCAAGGAAACGAGGCCCGCTAGCCATATGCTCGGCACAGGAGGGTTCCCGCTGCACTATCTGAAGCAGAACGGAGGTGTGCTCTCGCTAGAGCCTCCACTCGAACAGTACGGGACGCCGGACTTACGTCACCTGCCCGACATTGTGCAGGCCGAGCCGCCGAAGCCGCGGAAACACAACCCTAACTCGGAGCTGCGGCTGTTCAAATGTCTGACTTGCGGGAAAGACTTCAAGCAGAAGTCGACGCTGCTGCAGCACGAGCGCATCCACACGGACTCGCGGCCTTACGGCTGCCCGGAATGCGGCAAGCGGTTCCGCCAGCAGTCTCACCTCACACAGCACCTGCGCATCCACGCCAACGAGAAGCCGTACGCGTGCGTCTACTGCCCGCGATCCTTCCGTCAGCGCGCCATCCTCAACCAACATCTGCGAATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGACGTGTCGCCGCACCTCATCTTTAAGAACGGCACGACGCCGACGCTATGGCCGCAGGACGTGCCGTACCCGCCGGACGAGAACAAGGAGGAGATCCAGTCGACGTTCGGCGACACGGACGGAACGGGCGAGCAGCGCGGCTCGTGCTTCTCTCCGGGCGACACGGCGCAGTACCCCGCATACTTCAAGGACACGAAGGGTCTCAACCACACCGTGTTCGGTTCGAGTCTCTCGCTGCAGTACCTGAAGGGCGGCAAGCTACCGGACGTGCTCGGCGGGCGTGCGATGCCGCTCTACGTGCGCTGCCCCATCTGCCAGAAGGAGTTCAAACAGAAGTCGACGCTGCTGCAGCACGGCTGCATCCACATAGAGTCGCGGCCGTACCCGTGCCCCGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCATCTCACGCAGCACCTGCGCATCCACACGAACGAGAAGCCGTACGGGTGCGTGTACTGCCCGCGCTTCTTCCGCCAGCGCACGATCCTCAACCAGCACCTGCGCATCCACACCGGCGAGAAGCCTTACAAATGCACGCAGTGCGGGAAGGACTTCAGACAGAAGGCGATCCTGGACCAGCACACGCGCACGCACCAGGGCGATCGGCCCTTCTGCTGTCCGATGCCGAACTGTCGGCGACGGTTTGCCACCGAGCCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGGGAAGGCTCGGCGCGAGGGTAGCAAGACGCCGCGACCATTGCCCCCGGCCGCAGCGGTGGTGAAGCCGGAGCTTTACTTCCCGCAGTGTTACGCGCCTCCGTTCCAACAGTTCCCCGGCGGTGGTGCGGAGTTCAAGCCTGCGACGGGCGGATGTCTCCCGGCGCAGTGA
Protein Sequence: MQPHEQLTNKVVLFPDTTAPYVLYKDGVERAPPGTQWGGTVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPDPTAPPDDPAQQLAQQQQQQQQQQQQQQQQQQQQQTSPEHMTVEQQLQSQPQQAPTQDHLDRTPCFVPQPDLQQQYTPYFKETRPASHMLGTGGFPLHYLKQNGGVLSLEPPLEQYGTPDLRHLPDIVQAEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQDVSPHLIFKNGTTPTLWPQDVPYPPDENKEEIQSTFGDTDGTGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGSSLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAGKARREGSKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPGGGAEFKPATGGCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00666722; iTF_00143249; iTF_00896148; iTF_00935956; iTF_00635637; iTF_01529430; iTF_01504109; iTF_01336150; iTF_01528534; iTF_00034039; iTF_01429272; iTF_00791419; iTF_00818523; iTF_00650249; iTF_00250701;
90% Identity: iTF_01172604;
80% Identity: -