Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000020.1:1068841-1071166[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.7e-06 0.00019 22.1 1.7 1 23 221 243 221 243 0.98

2 8 2.6e-08 1.9e-06 28.4 1.6 3 23 251 271 249 271 0.98

3 8 8.9e-05 0.0063 17.3 0.3 1 23 277 299 277 299 0.98

4 8 2e-05 0.0014 19.4 1.7 2 23 401 422 400 422 0.96

5 8 2.5e-09 1.8e-07 31.6 1.6 1 23 428 450 428 450 0.98

6 8 0.0022 0.15 12.9 0.6 3 23 458 478 456 478 0.97

7 8 5.5e-05 0.0039 17.9 1.5 1 23 484 506 484 506 0.99

8 8 0.017 1.2 10.1 0.8 1 23 512 536 512 536 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.7e-06	0.00019	22.1	1.7	1	23	221	243	221	243	0.98
2	8	2.6e-08	1.9e-06	28.4	1.6	3	23	251	271	249	271	0.98
3	8	8.9e-05	0.0063	17.3	0.3	1	23	277	299	277	299	0.98
4	8	2e-05	0.0014	19.4	1.7	2	23	401	422	400	422	0.96
5	8	2.5e-09	1.8e-07	31.6	1.6	1	23	428	450	428	450	0.98
6	8	0.0022	0.15	12.9	0.6	3	23	458	478	456	478	0.97
7	8	5.5e-05	0.0039	17.9	1.5	1	23	484	506	484	506	0.99
8	8	0.017	1.2	10.1	0.8	1	23	512	536	512	536	0.95

Sequence Information

Coding Sequence: ATGTACCAAGCACAGACAGATACGACAGCGCCGTATGTGCTGTACAAGGATGGCGTTGAGCGAGCACCACCCGGCACCCAGTGGGGGGGCGCCGTGCTGGACGGCGGGTACCAACCCATGCAGCACCAAAGCCCCGGCGGACCGTCGCCGCAGCCCGAGCCGCAGCTTGCGTCTCCCGCGCCCTCGCCCTATCCACCCGCTCCTCCGCCCCCCGACCCCACGGGCGCCGTCGACGAACAGCAGCTCGCGCAGGCGCAGCAACAAGCCCAACAACAAGCGCAACAACAAGCACAGCAACAACAACAGCAGCAACAACAACAACAGACCTCCCCCGAACACATGCAAGTGGAGCAACAGCTACAAAACCAGCCGCAGCCGCAGGCACCGACACAGGACCATCTAGATCGAGCGCCCTGCTTCGTACCACAGCCAGATTTGCAACAGCAATATACGCCTTATTTCAAAGAGACGAGGCCGACAAGCCACATGCTCGGAACGGGTGGATTTCCCCTACATTACTTGAAACAGAACGGGGGCGTGCTATCACTTGAAGGTCCGCTAGACCAATACGGAACGCCCGACTTGAGGCACCTGCCGGATATAGTACAGCCGGAGCAGCcgaagccgcgcaagcacaatccgaactcggagctacgactgttcaagtgtttgacttgcgggaaagatttcaagcagaagtcgacgctgctgcagcacgagcgcatccacacggactcgcggccgtacggctgcccggagtgcggcaagcggttccggcagcagtcgcacctcacgcagcacctccgcatccacgccaacgagaagccgtacgcgtgtgtgtactgcccacgctccttccgccagcgcgcgatcctcaaccagcacctgcgcatccattccgATGTATCGCCGCACCTCATCTTCAAGAACGGCACAACACCGACTCTATGGCCTCAGGATGTGCCGTACCCACCAGACGAGAACAAGGAGGAGATCCAATCGCAGTTTGGAGATGCGGAAGCGGGAGGCGAGCAACGCGGTTCGTGCTTCTCGCCCGGAGACACCGCGCAGTACCCTGCCTACTTCAAGGACACCAAGGGGCTGAACCACGCCGTGTTCGGCGCCGGCCTCTCGCTGCAGTACCTCAAGGGTGGCAAGTTGCCGGACGTGCTTGGCGGACGCGCCATGCCACTCTACGTGCGTTGCcctatctgccagaaggagttcaagcagaagtcaacgttgctgcaacacggttgcatccacatagagtcgcgcccctacccgtgccccgagtgcggcaagcggttccgccagcagtcgcatctcacgcaacatcttcgcatccacacgaacgagaagccgtacggctgcgtgtactgccctcggttcttccggcagcgcactatcctcaatcagcacctgcgcatccatactggcgaaaaaccgtacaaatgcacgcaatgtgggaaggactttcggcagaaggcgatcctcgaccagcacacgcgtacgcaccaaggcgaccggccgttctgctgcccgatgccgaactgccggcgacggttcgccaccgagccggaggtgaagaagcacatagacaaccacatgaacccgcacgcggcgaaagCGCGGCGCGCGGACGCGAACAAGACGCCGCGACCGCTGCCGCCGGCCTCGGCCGTGGTGAAGCCGGAGCTGTACTTCCCGCAGTGTTACGCACCGCCCTTCCAGCAGTTCCCGGGCGCGGGTGCAGAGTTCAAGCCGACGCCGGGCGGATGCCTGCCGGCGCAGTGA
Protein Sequence: MYQAQTDTTAPYVLYKDGVERAPPGTQWGGAVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTGAVDEQQLAQAQQQAQQQAQQQAQQQQQQQQQQQTSPEHMQVEQQLQNQPQPQAPTQDHLDRAPCFVPQPDLQQQYTPYFKETRPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYGTPDLRHLPDIVQPEQPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSDVSPHLIFKNGTTPTLWPQDVPYPPDENKEEIQSQFGDAEAGGEQRGSCFSPGDTAQYPAYFKDTKGLNHAVFGAGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADANKTPRPLPPASAVVKPELYFPQCYAPPFQQFPGAGAEFKPTPGGCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00790532;
90% Identity: iTF_00806988;
80% Identity: -