Basic Information

Gene Symbol
-
Assembly
GCA_905220475.1
Location
HG992035.1:2519762-2522722[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 3.1e-06 0.00029 21.8 1.7 1 23 294 316 294 316 0.98
2 9 2.9e-08 2.8e-06 28.2 1.6 3 23 324 344 322 344 0.98
3 9 0.0001 0.0094 17.1 0.3 1 23 350 372 350 372 0.98
4 9 2.2e-05 0.0021 19.1 1.8 1 23 378 400 378 400 0.99
5 9 2.2e-05 0.0021 19.1 1.7 2 23 502 523 501 523 0.96
6 9 2.9e-09 2.7e-07 31.4 1.6 1 23 529 551 529 551 0.98
7 9 0.0024 0.23 12.7 0.6 3 23 559 579 557 579 0.97
8 9 6.2e-05 0.0059 17.7 1.5 1 23 585 607 585 607 0.99
9 9 0.019 1.8 9.9 0.8 1 23 613 637 613 637 0.95

Sequence Information

Coding Sequence
ATGCACCGGACTAGATGCAATGAATCATTAGAAACCGATCATTCTGTGAATTCTTGCTATGCTAATGATCACCTCATGAAACGTGTGATATTAAAATCCAATCATAACAGCGAATTTAGGAACCATCGCGCGCCGCACGCGACCTCGCGGGTTGCTGCTATCCCCGGGTTCTTAGACACGCCATCGCCCGTCGCCGGAGCGATTTACCAACGATTTATAGTTGGCACAGACCGACAAACAACAGCGCCGTACGTGCTATACAAAGATGGCGTGGAGCGCGCTCCACCTGGAACCCAATGGGGCGGCGCGGTGCTGGACGCCGGCTACCAGCCCATGCAGCACCAGAGCCCCGGCGGGCCCTCACCGCAGCCCGAGCCGCAGCTCGCCTCCCCGGCGCCTTCACCCTATCCTCCGGCACCACCGCCCCCTGATCCCATCACTGCGGAAGACGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGGACCACCTCGACCGGACCCCCTGCTTCGTGCCGCAGCCCGACCTGCAGCAGCAGTATACGCCATATTTCAAGGAGACGAGGCCGACAGGTCACATGCTCGGAGGCGGCGGATTCCCTCTGCACTATTTGAAGCAGAACGGCGGCGTATTGTCGCTGGAAGCGCCGCTGGAGCAGTACGGCGCGCCCGACCTGCGCCACCTGCCTGACATCGTGCAACCAGAGCCTCCCAAGCCGCGCAAGCACAACCCTAACTCGGAGCTGCGGCTGTTCAAATGCTTGACGTGCGGTAAAGACTTTAAGCAGAAGTCGACGCTGCTACAGCACGAGCGCATCCACACGGACTCTCGGCCGTACGGCTGTCCCGAGTGCGGCAAGCGGTTCCGGCAGCAGTCCCATCTCACGCAGCACCTGCGCATCCACGCCAACGAGAAGCCGTACGCGTGCGTCTACTGCCCGCGCTCCTTCCGCCAGCGCGCGATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGTCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACATCAAGACGTGTCTCCGCACCTCATCTTCAAGAACGGCACGACGCCAACGCTGTGGCCGCAGGACGTACCGTTCCCGCCAGACGAACACAAGGAAGAGATCCAGTCGCAGTATGGGGACGCGGACGGTTCGGGCGAGCAGCGCGGCTCGTGCTTCTCGCCCGGCGATACGGCGCAGTACCCCGCCTACTTCAAAGATACTAAGGGGCTGAACCACGCCGTGTTCGGCACCAGTCTCTCGCTGCAGTACCTCAAGGGCGGCAAACTACCCGACGTACTCGGAGGCCGCGCCATGCCGCTCTACGTGCGCTGTCCCATCTGTCAGAAAGAGTTCAAGCAGAAGTCAACGCTGCTGCAGCACGGCTGCATCCACATCGAGTCGCGGCCGTACCCGTGCCCCGAGTGCGGCAAGCGGTTCCGGCAACAGTCTCACCTAACGCAGCACCTTCGCATCCACACGAACGAGAAGCCATACGGCTGCGTGTACTGCCCGCGCTTCTTCAGGCAGCGCACGATCCTGAACCAGCACTTGCGCATCCACACGGGCGAGAAGCCGTACAAGTGCACGCAGTGCGGGAAGGACTTCCGGCAGAAGGCGATCCTGGACCAGCACACGCGCACGCACCAGGGCGACCGGCCGTTCTGCTGCCCGATGCCGAACTGCCGGCGGCGGTTCGCGACGGAGCCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGGCAAGGCTCGGCGCGCGGACGGCACCAAGCCGCCGCGGCCGCTGCCGCCCGCGTCCGCCGTGGTGAAGCCGGAGCTGTACTTCCCCCAGTGCTACGCGCCGCCCTTCCAGCAGTTCGGCGGGGAGTTCAAGCCGGCGGTGGCGCCGGGCGGCTGCCTGCCGGCGCAGTGA
Protein Sequence
MHRTRCNESLETDHSVNSCYANDHLMKRVILKSNHNSEFRNHRAPHATSRVAAIPGFLDTPSPVAGAIYQRFIVGTDRQTTAPYVLYKDGVERAPPGTQWGGAVLDAGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPITAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDHLDRTPCFVPQPDLQQQYTPYFKETRPTGHMLGGGGFPLHYLKQNGGVLSLEAPLEQYGAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCVECGKHFRQKAILNQHVRTHQDVSPHLIFKNGTTPTLWPQDVPFPPDEHKEEIQSQYGDADGSGEQRGSCFSPGDTAQYPAYFKDTKGLNHAVFGTSLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAGKARRADGTKPPRPLPPASAVVKPELYFPQCYAPPFQQFGGEFKPAVAPGGCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00790532;
90% Identity
iTF_00818523;
80% Identity
-