Hzea009462.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ118354.1:156921-158321[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.8e-05 0.34 11.1 0.4 10 48 165 204 157 208 0.88 2 6 0.00043 8.2 6.7 0.0 21 44 237 260 232 267 0.87 3 6 0.00016 3.1 8.1 0.2 26 46 298 318 291 322 0.91 4 6 0.0059 1.1e+02 3.1 0.0 26 53 326 353 319 354 0.86 5 6 3.1e-05 0.59 10.4 0.1 7 48 360 401 357 405 0.95 6 6 0.52 9.8e+03 -3.1 0.1 5 16 453 464 450 464 0.79
Sequence Information
- Coding Sequence
- atgaagACCAATTTATGCAGGTTGTGTTGTCAAATTGAAGGCACAGTTTGCATTTTCAATAGCGAAGtgagttcaaaaataatatattgttgtcCAAATATAAAGATTAAAGATGATGATGGACTTCCATCAAATATTTGTGATAACTGCAATGACGACTTGGCTGCCTGCTATCAATTTATTCTTAAATGCGAAGCATCGGACAAGAAATTGCATTCTCAATGTTTGGCTTTGAAGGTGATATCCCAAGTTATAGCAGACCTTAACGTCTGCGAACCTAAGCTGGAAGTGAAGACTGAAGCCTGCGACAGTTACGATGAACAGTTTTACACAGAAGACGCCGATATACCACTTGAACAAATTAAGCAAGAGCAATTGCAAACTGATGAACCTAAAATAATCTCCCGGAAACGTAAAACCTACACATCAAGATCAAAATGCAAGGGAGTGCAGGCATATCCATGTGCAGACTGTGGCCGAGAATTTGCGTATCCTTCAACATATAAGGTGCACATGAGATCCCATACTGATGAGAAGCCACATCCTTGTCCCACTTGTGATAAGAGATACAAGGACACCAGCGCACTGAAACGGCACATAGATAATGCTCACTCTCATGTACAAAAGAGGAGAGATTTTGTTTGTGAACACTGTGGCAAAGCCTTCTTTGCAAAAAAAGATGTAATAATTCATATGCGCACACACACTGGAGAAACACCATACAAATGTTCTATCTGTGGTGCTAAGTTCACACAAATCAGTGGATtacaaagacataaaaaaagGCACACTGGTGAGAAGAACCATCTGTGCACAGCTTGTCCTAAGACTTTTTGTACCAAAGAAGAACTAAAGAATCACCAGATAGTGCATAGCAATGTGAAAAGATACACTTGCTCTGTGTGTAACTCACagttcaaatacaaaaataatttaagaaaacacATGCATCTGCACTCTGAATCCACTAACTTTGTATGTAGCTTTTGTGGACGTACCTTCAAACTGAAGGGGAACTTAAAGACCCACCTTGACTCCCAACACTCGGAGAAGTCCGGCTACTGCAATGTTTGTATAAAGCACGTCCCCAACATGGAGATGCACATGTGGAGGCACACGGGGCAGCGTCCCATCAAGTGTGAGCTCTGTGACAGCTGCTTCTTTGAACACAAGGCTTTGGCCAGACATATGAACTTCAAACATACTAAAACTGATAAATATAAGTGTGAATTTGAAGGGTGCAACCTGTCATACCCCTCTAAACCAATGGTAGACTTCCATTTTGCCAAAGTGCACTCTACCCACATCCCATTCCCTTGTGATAGGTGCTCAAGGGGCTTCTATAGGAAGAATGATCTTGCCAGACATAAAATAGGTACTCATAAAGAGAGACTAAGTTAG
- Protein Sequence
- MKTNLCRLCCQIEGTVCIFNSEVSSKIIYCCPNIKIKDDDGLPSNICDNCNDDLAACYQFILKCEASDKKLHSQCLALKVISQVIADLNVCEPKLEVKTEACDSYDEQFYTEDADIPLEQIKQEQLQTDEPKIISRKRKTYTSRSKCKGVQAYPCADCGREFAYPSTYKVHMRSHTDEKPHPCPTCDKRYKDTSALKRHIDNAHSHVQKRRDFVCEHCGKAFFAKKDVIIHMRTHTGETPYKCSICGAKFTQISGLQRHKKRHTGEKNHLCTACPKTFCTKEELKNHQIVHSNVKRYTCSVCNSQFKYKNNLRKHMHLHSESTNFVCSFCGRTFKLKGNLKTHLDSQHSEKSGYCNVCIKHVPNMEMHMWRHTGQRPIKCELCDSCFFEHKALARHMNFKHTKTDKYKCEFEGCNLSYPSKPMVDFHFAKVHSTHIPFPCDRCSRGFYRKNDLARHKIGTHKERLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785685;
- 90% Identity
- iTF_00784615;
- 80% Identity
- iTF_00784615;