Hzea009462.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Helicoverpa zea
Gene Symbol
-
Assembly
GCA_002150865.1
Location
KZ118354.1:156921-158321[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.5e-07 3.2e-05 24.2 0.1 1 23 153 175 153 175 0.98
2 10 3.7e-06 0.00026 21.3 0.7 1 23 181 204 181 204 0.93
3 10 4.8e-06 0.00034 21.0 0.8 1 23 213 235 213 235 0.98
4 10 1.3e-06 9.5e-05 22.7 1.2 1 23 241 263 241 263 0.99
5 10 7.6e-05 0.0053 17.2 3.3 3 23 271 291 269 291 0.95
6 10 0.00014 0.0096 16.4 5.2 1 23 297 319 297 319 0.98
7 10 5.6e-06 0.0004 20.8 1.3 1 23 325 348 325 348 0.95
8 10 0.029 2 9.1 3.9 2 23 379 401 378 401 0.94
9 10 3.7 2.6e+02 2.5 0.2 1 13 407 421 407 424 0.90
10 10 0.00047 0.033 14.7 0.6 1 23 438 461 438 461 0.91

Sequence Information

Coding Sequence
atgaagACCAATTTATGCAGGTTGTGTTGTCAAATTGAAGGCACAGTTTGCATTTTCAATAGCGAAGtgagttcaaaaataatatattgttgtcCAAATATAAAGATTAAAGATGATGATGGACTTCCATCAAATATTTGTGATAACTGCAATGACGACTTGGCTGCCTGCTATCAATTTATTCTTAAATGCGAAGCATCGGACAAGAAATTGCATTCTCAATGTTTGGCTTTGAAGGTGATATCCCAAGTTATAGCAGACCTTAACGTCTGCGAACCTAAGCTGGAAGTGAAGACTGAAGCCTGCGACAGTTACGATGAACAGTTTTACACAGAAGACGCCGATATACCACTTGAACAAATTAAGCAAGAGCAATTGCAAACTGATGAACCTAAAATAATCTCCCGGAAACGTAAAACCTACACATCAAGATCAAAATGCAAGGGAGTGCAGGCATATCCATGTGCAGACTGTGGCCGAGAATTTGCGTATCCTTCAACATATAAGGTGCACATGAGATCCCATACTGATGAGAAGCCACATCCTTGTCCCACTTGTGATAAGAGATACAAGGACACCAGCGCACTGAAACGGCACATAGATAATGCTCACTCTCATGTACAAAAGAGGAGAGATTTTGTTTGTGAACACTGTGGCAAAGCCTTCTTTGCAAAAAAAGATGTAATAATTCATATGCGCACACACACTGGAGAAACACCATACAAATGTTCTATCTGTGGTGCTAAGTTCACACAAATCAGTGGATtacaaagacataaaaaaagGCACACTGGTGAGAAGAACCATCTGTGCACAGCTTGTCCTAAGACTTTTTGTACCAAAGAAGAACTAAAGAATCACCAGATAGTGCATAGCAATGTGAAAAGATACACTTGCTCTGTGTGTAACTCACagttcaaatacaaaaataatttaagaaaacacATGCATCTGCACTCTGAATCCACTAACTTTGTATGTAGCTTTTGTGGACGTACCTTCAAACTGAAGGGGAACTTAAAGACCCACCTTGACTCCCAACACTCGGAGAAGTCCGGCTACTGCAATGTTTGTATAAAGCACGTCCCCAACATGGAGATGCACATGTGGAGGCACACGGGGCAGCGTCCCATCAAGTGTGAGCTCTGTGACAGCTGCTTCTTTGAACACAAGGCTTTGGCCAGACATATGAACTTCAAACATACTAAAACTGATAAATATAAGTGTGAATTTGAAGGGTGCAACCTGTCATACCCCTCTAAACCAATGGTAGACTTCCATTTTGCCAAAGTGCACTCTACCCACATCCCATTCCCTTGTGATAGGTGCTCAAGGGGCTTCTATAGGAAGAATGATCTTGCCAGACATAAAATAGGTACTCATAAAGAGAGACTAAGTTAG
Protein Sequence
MKTNLCRLCCQIEGTVCIFNSEVSSKIIYCCPNIKIKDDDGLPSNICDNCNDDLAACYQFILKCEASDKKLHSQCLALKVISQVIADLNVCEPKLEVKTEACDSYDEQFYTEDADIPLEQIKQEQLQTDEPKIISRKRKTYTSRSKCKGVQAYPCADCGREFAYPSTYKVHMRSHTDEKPHPCPTCDKRYKDTSALKRHIDNAHSHVQKRRDFVCEHCGKAFFAKKDVIIHMRTHTGETPYKCSICGAKFTQISGLQRHKKRHTGEKNHLCTACPKTFCTKEELKNHQIVHSNVKRYTCSVCNSQFKYKNNLRKHMHLHSESTNFVCSFCGRTFKLKGNLKTHLDSQHSEKSGYCNVCIKHVPNMEMHMWRHTGQRPIKCELCDSCFFEHKALARHMNFKHTKTDKYKCEFEGCNLSYPSKPMVDFHFAKVHSTHIPFPCDRCSRGFYRKNDLARHKIGTHKERLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00785685;
90% Identity
iTF_00783763; iTF_00784055; iTF_00784861;
80% Identity
iTF_00784861;