Hsar016771.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- znf711
- Assembly
- GCA_917862395.2
- Location
- OU860796.2:17965193-17967699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.53 39 5.4 0.1 3 23 33 54 31 54 0.95 2 19 0.86 64 4.7 0.4 2 23 79 101 78 101 0.95 3 19 0.0046 0.34 11.9 0.8 2 23 124 145 123 145 0.97 4 19 0.00032 0.024 15.5 0.0 1 23 149 171 149 171 0.98 5 19 0.0018 0.13 13.2 1.5 1 23 176 199 176 199 0.97 6 19 1.7 1.3e+02 3.8 5.2 2 23 207 229 207 229 0.95 7 19 1.1e-05 0.00078 20.2 2.6 1 23 236 259 236 259 0.98 8 19 0.013 0.95 10.5 5.0 1 23 265 287 265 287 0.97 9 19 0.054 4 8.5 0.6 1 13 293 305 293 307 0.91 10 19 0.0015 0.11 13.4 0.9 1 23 383 406 383 406 0.92 11 19 0.033 2.5 9.2 0.5 2 23 433 455 432 455 0.96 12 19 0.12 8.6 7.4 3.1 2 23 478 499 477 499 0.97 13 19 0.00088 0.066 14.1 0.8 1 23 503 525 503 525 0.97 14 19 0.0015 0.11 13.4 2.4 1 23 530 553 530 553 0.98 15 19 0.03 2.2 9.3 0.2 2 23 561 583 561 583 0.96 16 19 0.00014 0.011 16.6 7.0 2 23 591 612 591 613 0.95 17 19 0.00056 0.041 14.8 1.1 1 23 619 641 619 641 0.98 18 19 3.1e-05 0.0023 18.7 4.3 1 23 647 669 647 669 0.99 19 19 2.3e-05 0.0017 19.1 4.8 1 23 675 698 675 698 0.98
Sequence Information
- Coding Sequence
- ATGCAAGAAGTAGAAAAGCACCGAAAAAATTTTATAGAAGTAATAACATATTCCAATGCAACGCCTATTCGCTTTAAAGGCGACATAGGTTACGGATGTTACTTTTGTTCAGAACAGTACCCGGAAGCTGCTGATCTCAAACTCCATACGATAACAAAACATGATAACGATAGTATTATACAAGTTGTCAAAGATATGCGTATTTATACAGTTAAATTAGATATAACGGGTTTGCAATGTTGTTTATGTCAATTAGATATATCAACGATAGAGGAACTAATGAATCATCTCATAAAAGAGCATCAACGTGTCATTTACGTGGACATCAAAAATCATATGGTtccatttaaatttgaaaatgacGATTTAAAATGTGCCATATGTTTAGCGAAATTTATGAAATTCAGAAATTTAACTGAACACATGAACACACATTATAGAAATTACGTGTGTGACGTATGTGGAGCTGGCTTTGTCAACCGTGATATTCTGCGGAGTCATCTGAGAATTCATAAAATAGGCAATTTCACATGCGATTTCTGCACAAAAACTTTTAACACTCTAGTGAAGAAACAGTCCcatataaatatagtacataaaaaattgtatatgacAAGAAAGTGCGGATATTGTAACGAACATTTCGATGATTATCATAAGAAAAACGAGCACTTGACAAAATTTCATGGCGTTAATTTAGTGATCTTTAAATGTGATCTGTGCGACAAAacttttattaatcaaaatcggtttaggCGTCATGTTAGAAAAGACCATCTTATGGAAAGAAACCACGAATGTGAACTTTGTGATATGAAATTCTTTTGtggtgaaaatttaaaaaaacatatgcgGACGCACACTGGAGAAAAGGACTATCACTGCAGTATATGTACCAAGTCTTTCGCACgtAATCCTACCGAAACTGTATATTTTGAAGAATTTAAGAATGTTACCAAATTaactagaaaaagaaaaataacagtGGACACTGAACGCACAGTAAAAAAGAAAGCTAAAGTAACGataggatttaaaaaaattaaattgaaaccaATTAAAGAATTATCCAAACATCATCACAATATTAAAGAGATACTTCAGTGTTCCAACACAACTCCTATACACGGCAAATGTGATCTGGGCTACTTGTGCTGCTATTGCACGGAACAATTTCCAGATCCAGCCGATTTGAAAAAACACACAATACAACTGCACAGAAATGGAACTAAACCTACTTTCTTTCAAAAGAGAGATCTACAAAAATTTTACGTCAAAGTCGACATCACTGGATTGCATTGTAACATTTGCTCGAAAGATATAGAGGATTTGGAAAAGTTGATCGATCACCTAAAAACTATGCATGACAGgaaaatatatacagatataaaaaacCATATGGTACCATTTAAATTTGGTAGTGAGGAATTGAAGTGTTTTATATGCTCAAACGTGTATAGCAAATTTAAGATGCTTCTAGAGCACATGCATAAACACTGTAGAAATTTTATATGCGAAATGTGTGGTGCCGGGTTTTTTAATCGAAGATCGTACATAAACCATCAGAAGTATCACGTTGTAGGAGAGTATAAATGTGATAGATGCGATAAGGTCTTCAATAATGTTCAAAAAAGAAACCAACACTTTAGGACCGTTCATGTACacgaatacaaattaaatagatGCGGATACTGCAATGAGAAATTTGCTGGATACCGAAACAAAGCTGAACATTTGAGAATTGTTCATGGCGTTGGATCTGAAACAGCTAAATGCCAAGCTTGTGAAAAGAGCTTTTGTAATAAAGACTCTTTACGAAAACATATCAAAAGACACCATTTAATGGAGAATCAATACAGCTGCACGTTATGTGACATGAAATTCTTTGCTAAAAGAAATTTATCAGAACATATGGTGACACATACGAAAATTCGTTCGTTTCAATGCAACGTATGTTTCAAGAAATACGGACGCAAGCACACATTACGAGAACACATGCGGATACACAACAACGACAAACGCTACAAATGCGAACACTGCGGAATGGCTTTTGTGCAAAAGTGCAGTTGGCGACGACATATGCAATCGAAACACGATGAGCAGGCTTAA
- Protein Sequence
- MQEVEKHRKNFIEVITYSNATPIRFKGDIGYGCYFCSEQYPEAADLKLHTITKHDNDSIIQVVKDMRIYTVKLDITGLQCCLCQLDISTIEELMNHLIKEHQRVIYVDIKNHMVPFKFENDDLKCAICLAKFMKFRNLTEHMNTHYRNYVCDVCGAGFVNRDILRSHLRIHKIGNFTCDFCTKTFNTLVKKQSHINIVHKKLYMTRKCGYCNEHFDDYHKKNEHLTKFHGVNLVIFKCDLCDKTFINQNRFRRHVRKDHLMERNHECELCDMKFFCGENLKKHMRTHTGEKDYHCSICTKSFARNPTETVYFEEFKNVTKLTRKRKITVDTERTVKKKAKVTIGFKKIKLKPIKELSKHHHNIKEILQCSNTTPIHGKCDLGYLCCYCTEQFPDPADLKKHTIQLHRNGTKPTFFQKRDLQKFYVKVDITGLHCNICSKDIEDLEKLIDHLKTMHDRKIYTDIKNHMVPFKFGSEELKCFICSNVYSKFKMLLEHMHKHCRNFICEMCGAGFFNRRSYINHQKYHVVGEYKCDRCDKVFNNVQKRNQHFRTVHVHEYKLNRCGYCNEKFAGYRNKAEHLRIVHGVGSETAKCQACEKSFCNKDSLRKHIKRHHLMENQYSCTLCDMKFFAKRNLSEHMVTHTKIRSFQCNVCFKKYGRKHTLREHMRIHNNDKRYKCEHCGMAFVQKCSWRRHMQSKHDEQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457411;
- 90% Identity
- iTF_00457411; iTF_00781214; iTF_00776863;
- 80% Identity
- -