Hcyd027938.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01002593.1:7275-10212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.089 11 7.7 0.1 3 23 87 108 85 108 0.96 2 19 0.67 86 4.9 0.3 2 23 133 155 132 155 0.93 3 19 0.0047 0.61 11.7 0.8 2 23 178 199 177 199 0.97 4 19 0.00032 0.042 15.3 0.0 1 23 203 225 203 225 0.98 5 19 0.0018 0.23 13.0 1.5 1 23 230 253 230 253 0.97 6 19 1.8 2.3e+02 3.6 5.2 2 23 261 283 261 283 0.95 7 19 3.1e-05 0.0039 18.6 1.7 2 23 291 313 290 313 0.96 8 19 0.041 5.2 8.7 8.2 1 23 319 341 319 341 0.98 9 19 1.4e-06 0.00018 22.8 5.5 1 23 347 369 347 369 0.98 10 19 0.0015 0.19 13.2 0.9 1 23 461 484 461 484 0.92 11 19 0.082 11 7.8 0.2 2 23 511 533 510 533 0.96 12 19 0.13 17 7.1 3.2 2 23 556 577 555 577 0.97 13 19 0.047 6.1 8.5 2.4 1 21 581 601 581 603 0.94 14 19 0.0022 0.28 12.7 2.0 1 23 608 631 608 631 0.98 15 19 0.053 6.8 8.4 0.4 2 23 639 661 639 661 0.97 16 19 0.00023 0.03 15.8 6.1 3 23 670 690 669 691 0.93 17 19 0.002 0.25 12.9 1.0 1 23 697 719 697 719 0.98 18 19 3.1e-05 0.004 18.5 4.3 1 23 725 747 725 747 0.99 19 19 2.3e-05 0.003 18.9 4.8 1 23 753 776 753 776 0.98
Sequence Information
- Coding Sequence
- ATGCACTGGGAAAACtgggaaaataattttgaagtacGTCAAAAGGGCATAATCAACGAATCTGAAGAAAAGCATGAAGAGACAGCAAAAAAAGTCAAGGAAATCAAAAGTAACACGCTAAAAAAGAGTCGCACTCCTAAAAAGAAAGTCGACGAAAAATGCATGCAAGAAGTAGAAAAGCACCGAAAAAATTTTGTAGAAGTAATAACATATTCTAATGCAACGCCTATTCGTTTTAAAGGCGATATAGGTTACGGATGTTACTTTTGTTCAGAACAGTACCCGGACGCTGCTGATCTCAAACTCCATACGATAACAAAACATGATAACGACAGCGTTATACAAGTTGCCAAAGATATGCGTATTTATACACTTAAATTAGATGTAACGGCTTTGCAATGTTGCATATGTCAATTAGATATATCAACGATAGAGGAACTAATGAATCATCTTGTGAAAGAGCACCAACGTGTAATTTACGTGGACATCAAAAATCATATGGttccatttaaatttgaaaatgagGATTTGAAATGTGCCATATGTTTAGcgaaatttatgaaattcagAAATTTAACTGAACACATGAACACACATTATAGAAATTACGTGTGTGACGTGTGCGGCGCTGGCTTCGTCAACCGTGACATTCTGCGCAGTCATCTGAGAATTCATAAAATAGGCGATTTCACTTGCGATTTCTGCACAAAAACGTTTAACACTCTAGTGAAGAAACAGTCCCATATAAACATAGtacataagaaaatgtatatgacAAGAAAGTGCGGATATTGTAACGAACATTTCGATGATTATCACAAGAAAAACGACCACTTGACGAAATTTCATGGCGTTGATTTAGTTATCTTAAAATGTGATCTTTGCGATAAAACTTTTATCAACCAAAATCGGTTTAATCGTCATGTTAGGAAAGATCATCTCATGGAAAGAAATCATGAATGTGGACTTTGTGATATGAAATTCTTTTgttgtgaaaatttaaaaaaacatatgcgGACGCACACTGGAGAGAAGGACTATCACTGCAGTATATGCACCAAGTCTTTTGCACGcaagttttctttaaaaaaacacttgcGAACACATTCTAAGAATCTGGAGGAATCTGACACGGATGCTGACCGTGATCCTACCGAAACTGTATATTTTGAAGAATTTAAGAATGTTCGCAAATTaactagaaaaagaaaaataacagtgGACAGTGAACGCACTATGAAAAAGAAAGCTAAAGTAACGATAggatctaaaaaaattaaattaaaaccaatTAAAGAATTATCCAAACATCATCACAATATAAAAGAGATACTCCAGTGTTCCAACACAACTCCTATACACGGAAAATGCGATCTGGGCTACTTGTGCTGCTATTGCACTGAACAGTTTCCAGATCCAGCCGATTTGAAAAAACACACAATACAACTACACAGGAATGGAATTAAACCGACTTTCTTTCAAAAGAGAGATTTACAGAAATTTTACGTCAAAGTCGACATCACTGGATTGCATTGTAACATTTGCGCGAAAGATATAGAGGATTTGGACAAGTTGATCGATCACCTAAAAACTGTGCATGataggaaaatatatacagatataaaaaaCCATATGGTACCATTTAAATTTGGTAGTGAGGAactgaaatgttttatatgttcaAACGTATATACTAAATTCAAAATGCTTCTGGAGCACATGCATAAACActgtagaaattttatatgtgaacTGTGTGGTGTCGGATTTTTTAATCGTAGATCGTACATAAATCACCAGAAGTGTCACGTGGTGGGAGAATACAAATGCGACCGGTGCGACAAGGTCTTCGATAATGttcaaaaaagaaatcaacaCTTTAGGACCGTTCATGTCCACGAGTACAAACTAAATAGATGCGGATACTGCAACGAGAAGTTTGCTGGATACCGAACTAAAGCTGAACATTTGAGAACTGTTCACGGCGCTGGATCTGAAACGGCCGAATGCCGAGCTTGTGAAAAGAGCTTTTGTAATAAAGACTctttaagaaaacatatcaAAAGACACCATTTGATGGAGAATCAATACAGCTGTACATTATGTGAAATGAAATTCTTTGCTAAGAGAAATCTATCAGAACATATGGTGACACATACGAAAATCCGTTCGTTTCAATGCAACGTATGCTTTAAGAAGTATGGGCGAAAGCACACGTTACGAGAACACATGCGAATACACAACAACGACAAACGCTACAAGTGCGAACACTGCGGGATGGCTTTCGTGCAAAAGTGCAGTTGGCGACGACATATGCAATCGAAACACGACGAGCAGGTTTAA
- Protein Sequence
- MHWENWENNFEVRQKGIINESEEKHEETAKKVKEIKSNTLKKSRTPKKKVDEKCMQEVEKHRKNFVEVITYSNATPIRFKGDIGYGCYFCSEQYPDAADLKLHTITKHDNDSVIQVAKDMRIYTLKLDVTALQCCICQLDISTIEELMNHLVKEHQRVIYVDIKNHMVPFKFENEDLKCAICLAKFMKFRNLTEHMNTHYRNYVCDVCGAGFVNRDILRSHLRIHKIGDFTCDFCTKTFNTLVKKQSHINIVHKKMYMTRKCGYCNEHFDDYHKKNDHLTKFHGVDLVILKCDLCDKTFINQNRFNRHVRKDHLMERNHECGLCDMKFFCCENLKKHMRTHTGEKDYHCSICTKSFARKFSLKKHLRTHSKNLEESDTDADRDPTETVYFEEFKNVRKLTRKRKITVDSERTMKKKAKVTIGSKKIKLKPIKELSKHHHNIKEILQCSNTTPIHGKCDLGYLCCYCTEQFPDPADLKKHTIQLHRNGIKPTFFQKRDLQKFYVKVDITGLHCNICAKDIEDLDKLIDHLKTVHDRKIYTDIKNHMVPFKFGSEELKCFICSNVYTKFKMLLEHMHKHCRNFICELCGVGFFNRRSYINHQKCHVVGEYKCDRCDKVFDNVQKRNQHFRTVHVHEYKLNRCGYCNEKFAGYRTKAEHLRTVHGAGSETAECRACEKSFCNKDSLRKHIKRHHLMENQYSCTLCEMKFFAKRNLSEHMVTHTKIRSFQCNVCFKKYGRKHTLREHMRIHNNDKRYKCEHCGMAFVQKCSWRRHMQSKHDEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457411;
- 90% Identity
- iTF_00782821;
- 80% Identity
- -