Hnat017941.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000236.1:14670363-14673262[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.42 29 5.5 0.1 3 23 83 104 81 104 0.91 2 19 0.61 42 5.0 0.3 2 23 129 151 128 151 0.93 3 19 0.0043 0.3 11.7 0.8 2 23 174 195 173 195 0.97 4 19 0.0003 0.02 15.4 0.0 1 23 199 221 199 221 0.98 5 19 0.0017 0.11 13.1 1.5 1 23 226 249 226 249 0.97 6 19 1.6 1.1e+02 3.6 5.2 2 23 257 279 257 279 0.95 7 19 2.5e-05 0.0017 18.8 2.0 2 23 287 309 286 309 0.96 8 19 0.021 1.4 9.6 6.3 1 23 315 337 315 337 0.98 9 19 0.14 9.8 7.0 0.6 1 12 343 354 343 355 0.92 10 19 0.0014 0.095 13.3 0.9 1 23 433 456 433 456 0.92 11 19 0.38 26 5.6 0.1 2 23 483 505 482 505 0.95 12 19 0.12 8.4 7.2 3.2 2 23 528 549 527 549 0.97 13 19 0.044 3 8.6 2.4 1 21 553 573 553 575 0.94 14 19 0.002 0.14 12.8 2.0 1 23 580 603 580 603 0.98 15 19 0.11 7.8 7.3 0.2 2 23 611 633 611 633 0.95 16 19 0.00014 0.0092 16.5 7.0 2 23 641 662 641 663 0.95 17 19 0.0046 0.32 11.7 0.5 1 23 669 691 669 691 0.98 18 19 2.9e-05 0.002 18.6 4.3 1 23 697 719 697 719 0.99 19 19 1.9e-05 0.0013 19.2 5.1 1 23 725 748 725 748 0.98
Sequence Information
- Coding Sequence
- ATGCACTTGGAAAACTGGGAAAAGAATTTTGATGTACGTCAAAAGGGCATAATCAACGAATCTGAAGAGATAGCAAAAAAAGTCAAGGAAACCAATAGTAACACGCTAAAAAAGAGTCGCACTCCTAAAAAGAAAGTCGACGAAAAAGGCATGCAAGAAGTAGAAAAGCACCGAAAAAATTTTGTAGAAGTAATAACATATTCAAACGCAACGCCTATTCGTTTTAAAGGCGATATAGGTTACGGATGTTACTTTTGTTCAGAACAGTACCCGGACGCTGCTGATCTCAAACTCCATACGATAGCAAAACATGACAACGACAGCATTACACAAGTGGCCAAAGATATGCGTATTTATACACTTAAATTAGACGTGACGGCTTTGCAATGTTGCATATGTCAATTAGATATATCAACGATAGAGGAACTGATGAATCATCTTGTGAAAGAGCACCAACGTGTAATTTACGTGGACATCAAAAATCATATGGttccatttaaatttgaaaatgacgATTTGAAATGTGCCATATGTTTAgcaaaatttatgaaattcagAAATTTAACTGAACACATGAACACACATTATAGAAATTACGTGTGTGACGTATGCGGCGCTGGCTTCGTCAACCGTGACATTCTGCGCAGTCATCTGAGAATTCATAAAATAGGCGATTTCACTTGCGATTTCTGCACAAAAACGTTTAACACTCTAGTGAAGAAACAGTCCCATATAAACatagtacataaaaaaatgtacatgacAAGAAAGTGCGGATATTGTAACGAACATTTCGATGATTATCACAAGAAAAACGACCACTTGACGAAGTTTCATGGTGTTGATTTAGTTATCTTAAAATGTGAGCTGTGCGATAAAACTTTTATCAACCAAAATCGGTTTAAGCGTCATGTTAGAAAAGATCATCTCATGGAAAGAAATCATCAATGTCAACTTTGTGATATGAAATTCTTTTGtggtgaaaatttaaaaaaacatatgcgGACGCACACTGGAGAGAAGGACTATCATTGCAGTATATGCACCAAGTCTTTTGCACGTGATCCCACCGAAACTGTATATTTTGAAGAATTTAAGAATGTTCGCAAATTaagtagaaaaagaaaaataacagtGGACAGTGAACGCACTATGAAAAAGAAAGCTAAAGTAACGATAggatctaaaaaaattaaattaaaaccaatTAAAGAATTATCCAAACATCATCACAACATAAAAGAGATACTCCAGTGTTCCAACACAACTCCTATACACGGCAAATGTGATCTGGGCTACTTGTGCTGCTATTGCACTGAACAGTTCCCAGATCCAGCCGATTTGAAAAAACACACAATACAACTGCACAGGAATGGAATTAAACCGACTTTCTTTCAAAAGAGAGATTTACAGAAATTTTACGTCAAAGTCGACATCACTGGATTGCATTGCAACATTTGCGCGGAAGATATAGAGGATTTGGACAAGTTGATCGATCACCTAAAAACTGTGCATGataggaaaatatatacagatataaaAAACCATATGGTACCATTTAAATTTGGTAGTGAGGAactgaaatgttttatatgttcAAACGTATATACTAAATTCAAAATGCTTCTGGAGCACATGCATAAACACTgtagaaattttatatgtgaaCTGTGTGGTGTCGGATTTTTTAATCGTAGATCGTACATAAATCACCAGAAGTGTCACGTGGTGGGAGAATACAAATGCGACCGATGCGACAAGGTCTTCGATAATGTTCAAAAAAGAAATCAGCACTTTAGGACCGTTCATGTCCACGAGTACAAACTAAATAGATGCGGATATTGCAATGAGAAGTTTGCTGGATACCGAACTAAAGCTGAACATTTGAGAATTGTTCACGGCGTTGGATCTGAAACGGCCAAATGCCAAGCTTGTGAAAAGAGCTTTTGTAATAAAGACTCTTTAAGAAAACATATCAAAAGACACCATTTGATGGAGAATCAATACAGCTGTGCATTGTGTGAAATGAAATTCTTTGCTAAGAGAAATTTATCAGAACATATGGTGACACATACGAAAATCCGTTCGTTTCAATGCAACGTATGCTTCAAGAAATATGGGCGAAAGCACACATTACGAGAACACATGCGAATACATAACAACGACAAACGCTACAAATGCGAACACTGTGGGACGGCTTTTGTACAAAAGTGCAGTTGGCGACGACATATGCAATCGAAACACGACGAGCAGGTTTAA
- Protein Sequence
- MHLENWEKNFDVRQKGIINESEEIAKKVKETNSNTLKKSRTPKKKVDEKGMQEVEKHRKNFVEVITYSNATPIRFKGDIGYGCYFCSEQYPDAADLKLHTIAKHDNDSITQVAKDMRIYTLKLDVTALQCCICQLDISTIEELMNHLVKEHQRVIYVDIKNHMVPFKFENDDLKCAICLAKFMKFRNLTEHMNTHYRNYVCDVCGAGFVNRDILRSHLRIHKIGDFTCDFCTKTFNTLVKKQSHINIVHKKMYMTRKCGYCNEHFDDYHKKNDHLTKFHGVDLVILKCELCDKTFINQNRFKRHVRKDHLMERNHQCQLCDMKFFCGENLKKHMRTHTGEKDYHCSICTKSFARDPTETVYFEEFKNVRKLSRKRKITVDSERTMKKKAKVTIGSKKIKLKPIKELSKHHHNIKEILQCSNTTPIHGKCDLGYLCCYCTEQFPDPADLKKHTIQLHRNGIKPTFFQKRDLQKFYVKVDITGLHCNICAEDIEDLDKLIDHLKTVHDRKIYTDIKNHMVPFKFGSEELKCFICSNVYTKFKMLLEHMHKHCRNFICELCGVGFFNRRSYINHQKCHVVGEYKCDRCDKVFDNVQKRNQHFRTVHVHEYKLNRCGYCNEKFAGYRTKAEHLRIVHGVGSETAKCQACEKSFCNKDSLRKHIKRHHLMENQYSCALCEMKFFAKRNLSEHMVTHTKIRSFQCNVCFKKYGRKHTLREHMRIHNNDKRYKCEHCGTAFVQKCSWRRHMQSKHDEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457411;
- 90% Identity
- iTF_00782821;
- 80% Identity
- -