Hnum026985.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010013311.1:2230143-2232741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.039 4 8.8 0.3 5 23 348 366 347 366 0.96 2 11 0.0056 0.57 11.5 0.1 3 23 374 394 372 394 0.95 3 11 0.04 4.1 8.8 0.8 2 23 403 424 402 424 0.94 4 11 3.6e-05 0.0036 18.4 2.7 2 23 429 450 429 450 0.98 5 11 0.00066 0.067 14.4 4.3 1 23 456 478 456 478 0.98 6 11 0.00023 0.023 15.9 0.5 1 20 482 501 482 503 0.94 7 11 5.3e-05 0.0053 17.9 0.1 1 23 536 559 536 559 0.96 8 11 8.4e-05 0.0085 17.2 1.4 1 23 578 600 578 600 0.98 9 11 9.4e-06 0.00095 20.2 3.3 1 23 606 628 606 628 0.98 10 11 0.0023 0.24 12.7 0.3 3 23 636 656 634 656 0.98 11 11 3.6e-06 0.00036 21.5 0.9 1 23 662 685 662 685 0.97
Sequence Information
- Coding Sequence
- ATGAAGTGTTTTAACATGGAATCATGGTCGGATTTGTGTCGCTGCTGTCTTGCTCCAGATTCGGAAGTGTCACTTTTTGATGCCGAAGATAGTGTGCAAGAGAAGTTTTTGGAAATTACTACAATTGAGCCAAAAGAAGATGATGGTTTACCTCAAAGGCTATGTAGTGATTGTTTTACATTAATGACATCAGCATATCAATTCAGGATGCAGTGCATGAAAGTAGACAAAGAGTTAAAACTTCAATTAGAATCCCTCATAAAACAAAGTAAGGAGGATGAAATATCAGAAATGTCCTTTTCACAAATAGAAACCCAATTGAAAGCAAGTGAAGACATGACAATAGAAGATCTTGCTAAGGAGTCATTCAAACAGCTTGAGTCTATAATAAAAAAGGAACCAAATGATAATGATGATGACTTTTATTATGTAGTTGTTGTAGGTAACCCAAAAGATAATAAATTGGATGATGAGAAAAGTAAAGATAATATAGCAACAGAACCTTTAGTTAAAGAGGAGGAAGAAGTTCATAATGATGCAAGCCCAAGTTCAAATCAGTTTGAGAGCACAATTGATTCATTTCTTGTAACTAACCCAAAAGTATCAATGCATGTACCAGACACAATTTTGGAAAATGAGGAAGTGGAAAATGACTTTGATCAACCAATGGATGTTGATGTCAATCATATGTCCCAAGATTTATTAATTAGTGAAGATTCTCAAGAAAAAAATGAATATACTATACCTTTAACACAAGATATGATAGACAACCTATCTAATTCTAAAAATTTCATCAAAATTTTAACTCCATCTGGAGTGGAAAAGACTATTTTAGTTAAAGGTGATAGTGTTAAGTACTTAACAGGTACTGATACTATAAAACTTGAAAGTGATTCAATTCCACAGGAAGTAATATTGTATGAGGGTGATGACTCACAGTTCCAGTTAGTCAAATGTGATGGATCCGAGTTAGTAATTGAGTATGCGGATGATAGTCAAATTGCAACTGTTTTACAACAAGAAGATGGCACTTTCTTATGTGATTGTGGTGAACAATTTGACGACTTGGAGACATATGAAAAACATCAATACAAACACAATCCAGCTGGTGACCATTTGTGTAATTTATGTGGTAAAGGGTTCGAATCTGCAGAGATTTTGACTGGACATATGTTGATACACAGCAACCCAACTGGTCCATTCGTTACTTGTCCATTTTGCAATCAAAACGTTAAAAGGAGTAGTCTAACTCAACATATAAAATATATGCACAATAGTAAACCACAGTGTGATGTTTGTTGTAAGACATTTGCGAATCAAAATAATTTGAGACGTCACATGATGATACACAGTGGTATTAAGGAGTTTGAGTGTGACATATGTAAAAAAAGATTCCATCAAAAAATAACTATGCAAACTCACAGACTTACGCATATAAGTCCCTTCACCTGCGGTCAGTGCGGGATTAAATTCGAAAATAAAGGTGATTTAACACACCATAAAGTAACTGATGAATGCTCAAAATCTAGAATAAATAAAGTTAAAGAAGAATTAATGAAGACAGTCAAGCAAGAAGTTACGACAGATGATGGCAAATTATTAGGTTACGCCTGTTCATTATGTAAAAAAATGTTTTCCGTCGAATCGGCGTTGGAACAGCATATAGAGAGTTCACACATTATTGAATCAGATGGACAACAAGATAAAAAAATTAGTAAAACTAGCAAAAGGTTTGAATGTTGTATTTGCGGTAAAGGATGCTCTAGCCAAGCCATGTTGATAATGCATGAAAGGGTCCATACAAATGAGCGGCCATTTCCGTGCCCACTTTGCTCTTTAAGATTTAAAACTAAAACTCATTTAAGAACTCATCAACTAACTCATACACGAGAAAAGAAATTTGGTTGTTCAGTTTGTATGAAGTTTTTTGCATTAAAAGGTAACTTGGTAGTTCATTTGCGAACCCACACTGGTGAAAGGCCATATGTATGTTCAATATGTGGTGAGGCCTTCATAGATTCTAAATATCTTAAGAAACACAAGCAAAAGAAACATGCTATAGATAATGTACCGTGGGATAAGTATGAATAA
- Protein Sequence
- MKCFNMESWSDLCRCCLAPDSEVSLFDAEDSVQEKFLEITTIEPKEDDGLPQRLCSDCFTLMTSAYQFRMQCMKVDKELKLQLESLIKQSKEDEISEMSFSQIETQLKASEDMTIEDLAKESFKQLESIIKKEPNDNDDDFYYVVVVGNPKDNKLDDEKSKDNIATEPLVKEEEEVHNDASPSSNQFESTIDSFLVTNPKVSMHVPDTILENEEVENDFDQPMDVDVNHMSQDLLISEDSQEKNEYTIPLTQDMIDNLSNSKNFIKILTPSGVEKTILVKGDSVKYLTGTDTIKLESDSIPQEVILYEGDDSQFQLVKCDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFDDLETYEKHQYKHNPAGDHLCNLCGKGFESAEILTGHMLIHSNPTGPFVTCPFCNQNVKRSSLTQHIKYMHNSKPQCDVCCKTFANQNNLRRHMMIHSGIKEFECDICKKRFHQKITMQTHRLTHISPFTCGQCGIKFENKGDLTHHKVTDECSKSRINKVKEELMKTVKQEVTTDDGKLLGYACSLCKKMFSVESALEQHIESSHIIESDGQQDKKISKTSKRFECCICGKGCSSQAMLIMHERVHTNERPFPCPLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKQKKHAIDNVPWDKYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160072;
- 90% Identity
- iTF_00781217; iTF_00776871; iTF_00780445; iTF_00779683; iTF_00778914; iTF_00778184; iTF_00782826; iTF_00776184; iTF_01182071; iTF_00457413; iTF_00775453; iTF_00775452;
- 80% Identity
- -