Hhim002582.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010004482.1:23123-26857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 2.1 9.1 0.7 5 23 350 368 349 368 0.97 2 11 0.0035 0.27 11.9 0.2 3 23 376 396 374 396 0.95 3 11 0.036 2.7 8.8 0.8 2 23 405 426 404 426 0.94 4 11 1.7e-07 1.3e-05 25.5 0.9 2 23 431 452 431 452 0.98 5 11 0.00059 0.045 14.4 4.3 1 23 458 480 458 480 0.98 6 11 0.0006 0.046 14.4 0.1 1 20 484 503 484 505 0.94 7 11 0.00016 0.012 16.2 0.1 1 23 538 561 538 561 0.96 8 11 7.4e-05 0.0057 17.2 1.4 1 23 580 602 580 602 0.98 9 11 5.6e-05 0.0043 17.6 4.5 1 23 608 630 608 630 0.98 10 11 0.0021 0.16 12.7 0.3 3 23 638 658 636 658 0.98 11 11 3.3e-05 0.0025 18.3 1.3 1 23 664 687 664 687 0.97
Sequence Information
- Coding Sequence
- atgaagtgttttaacatggAATCTTGGTCGGATTTGTGTCGCTGCTGTCTTGCTCCAGATTCGGAAGTGTCACTTTTTGATGCCGAAGATAGTGTGCGGGAGAAGTTTTTGGAAATTACTACAATTGAGcCTAAAGAAGATGATGGTTTACCTCAAAGGTTATGTAGTGATTGTTTTACATTAATGACATCAGCATATCAGTTCAGGATGCAGTGCATGAAAGTAGACAAAGAGTTAAAACTTCAATTAGAATCCCTTCTAAAACAAAGTAAGGAGGAGGAGGAACTGTCGGAAATGTCCTTTTCACAAATAGAAACCCAATTGAAAGCAAGTGAAGACATGACAATCGAAGATCTTGCTAAGGAATCATTCAAGCAGCTtgaatctataataaaaaaggaaccAAATGACAGTGATGATGACTTTTATTATGTAGTTGTTGTAGATAACCCAAAAGATGATAAATCTGATGATGAGAAATGTAAAGATAATTTAGACACAGAACCTGTGATAAgagaggaagaagaagaagataatAATGTTGCAAGCCCAAGTTCAAATCAGTTTGAGAGCACAATAGACTCATTTCTAGTAACTAACCCGAAAGTGTCAATGCATGTACCAGACACAATTTTGGAAAATGAGGAAGTGGAAAATGACTTTGATCAACCAATGGATGTAGATGTCAATCATATGTCCCAAGATCTATCAATTAGTGAGGATTCTCaagataaaaatgaatatgCAATACCTTTAACACAAGATATGATAGAAAACTTATCTAGTTCaaaaaatttcatcaaaattttaACTCCATCTGGAgtagaaaaaactattttagttaAGGGtgatagtgtaaaatatttaactggTACTGATTCTATAAAACTTGGTGGTGATTCAATTCCACAGGAAGTAATATTATATGAGGGAGATGACTCACAGTTCCAGTTAGTAAAATGTGATGGATCTGAGCTAGTAATTGAGTATGCGGACGACAGCCAAATTGCAACTGTTTTACAACAAGAGGATGGCACTTTCTTATGTGACTGCGGTGAAGAATTTGATGACTTGGAGACATATGAAAAACATCAACACAAACACAATCCAGCAGGAGAccatttgtgcaatttatgtgGCAAAGGATTCGAAACTGCAGAGATTTTAACGGGACATATGTTAATACACAGCAACCCAACTGGTCCATTCGTTACTTGTCCGTTTTGCAATCAAAACGTTAAACGAAGTAGTCTAActcaacatataaaatatatgcataatagTAAACCACAGTGTGATGTTTGTTCTAAAACATTtgcaaatcaaaataatttgagACGTCACATGATGATACATAGTGGTATAAAAGAATTTGAATGCGACATATGCAAAAAAAGATTCCATCAAAAAATAACCATGCAAACTCACAGACTTACACATATAAGTCCCTTCGTCTGCGGTCGGTGTGGGatcaaatttgaaaataaaggtGATTTAACAAACCACAAAGGAACTGATGAATGCTCAAAATCtagaatatataaagttaaagaagAATTAATGAAGACAGTCAAACAGGAAGTTACGACAGATGATGGTAAATTATTAGGTTACGCCTGTTCATTGTGTAAGAAAATGTTTTCCATCGAATCGGCATTGGAACAGCATATAGAAAGTTTACACATTATAGAATCAGATGGAcaacaagataaaaaaatgaataaaaccaGCAAAAGGTTTGAATGTTGTATTTGTGGTAAAGGCTGCTCTAGCCAAGCCATGCTTATCATGCATGAAAGGGTTCATACAAATGAGCGGCCATTTCCGTGCCAACTTTGCTCTTTAagatttaaaactaaaaccCATTTAAGAACTCATCAATTAACTCATACACGAGAAAAGAAATTTGGTTGTTCAGTTTGTATGAAGTTTTTTGCATTAAAAGGTAACTTAGTAGTTCATTTGAGAACCCACACTGGTGAAAGGCCATACGTTTGTTCAATATGCAGTGAGGCCTTCATAGAttctaaatatcttaaaaaacatAAGCAAAAGAAACATGCTATAGATAATGTACCTTGGGATAAGTATGAATAA
- Protein Sequence
- MKCFNMESWSDLCRCCLAPDSEVSLFDAEDSVREKFLEITTIEPKEDDGLPQRLCSDCFTLMTSAYQFRMQCMKVDKELKLQLESLLKQSKEEEELSEMSFSQIETQLKASEDMTIEDLAKESFKQLESIIKKEPNDSDDDFYYVVVVDNPKDDKSDDEKCKDNLDTEPVIREEEEEDNNVASPSSNQFESTIDSFLVTNPKVSMHVPDTILENEEVENDFDQPMDVDVNHMSQDLSISEDSQDKNEYAIPLTQDMIENLSSSKNFIKILTPSGVEKTILVKGDSVKYLTGTDSIKLGGDSIPQEVILYEGDDSQFQLVKCDGSELVIEYADDSQIATVLQQEDGTFLCDCGEEFDDLETYEKHQHKHNPAGDHLCNLCGKGFETAEILTGHMLIHSNPTGPFVTCPFCNQNVKRSSLTQHIKYMHNSKPQCDVCSKTFANQNNLRRHMMIHSGIKEFECDICKKRFHQKITMQTHRLTHISPFVCGRCGIKFENKGDLTNHKGTDECSKSRIYKVKEELMKTVKQEVTTDDGKLLGYACSLCKKMFSIESALEQHIESLHIIESDGQQDKKMNKTSKRFECCICGKGCSSQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICSEAFIDSKYLKKHKQKKHAIDNVPWDKYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160072;
- 90% Identity
- iTF_00782029;
- 80% Identity
- -