Hnat017940.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000236.1:14665789-14669798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.012 0.85 10.3 1.0 1 23 78 101 78 101 0.95 2 18 0.04 2.7 8.7 3.2 2 23 173 194 172 194 0.97 3 18 0.11 7.8 7.3 0.9 1 17 198 214 198 220 0.86 4 18 0.11 7.6 7.3 0.7 1 23 225 248 225 248 0.95 5 18 0.75 51 4.7 6.5 1 23 255 278 255 278 0.95 6 18 0.0024 0.16 12.6 1.0 2 23 286 308 285 308 0.96 7 18 0.00054 0.037 14.6 1.9 1 23 314 336 314 336 0.95 8 18 0.00011 0.0077 16.7 2.0 1 23 342 365 342 365 0.98 9 18 0.13 8.8 7.1 0.2 3 23 433 454 431 454 0.93 10 18 0.68 46 4.8 0.3 2 23 480 502 479 502 0.93 11 18 0.062 4.2 8.1 0.4 2 23 525 546 524 546 0.96 12 18 0.00021 0.015 15.9 0.7 3 23 552 572 550 572 0.96 13 18 1.8e-06 0.00012 22.4 0.9 1 23 577 600 577 600 0.98 14 18 1.3 91 3.9 0.3 2 23 608 630 607 630 0.84 15 18 0.0001 0.0069 16.9 0.6 2 23 638 660 637 660 0.96 16 18 4.6e-06 0.00031 21.1 1.5 1 23 666 688 666 688 0.98 17 18 1.8e-05 0.0012 19.2 4.1 1 23 694 716 694 716 0.99 18 18 0.00015 0.01 16.4 2.7 1 23 722 745 722 745 0.97
Sequence Information
- Coding Sequence
- ATGTCAAATACCAAGAAGTACATGATATGTCCTAAAACACTAGGTAAATCTCACAAAACATCCAAAGCATCATTGGACACTTCACAAGAGGATGAAATTGttgctataaataaagaagacGTAGTTCCTAAAGCTAGGCAAGGAGAACATTTGGAAAAACATAGAAACAATATAAGGGAAGTTATTCTTTCGTCGAACGCTACGCCGATTAGGTGTCGAGGTGGCATTGGTTATGCGTGTTGTTTTTGTTCCAGTCAGTTTCCTGATCCTGCAGACTTAAAGAAACATACGATTAAAGATCATGACGATAAGACGAAAGCAATATTTATGAAAGGGCGGGATATGTACGGATACTTAGTTAAATTAGATATTACAGGATTAGAATGTAATCTATGTCGATCAAGGCTGGAGACTCTAGAGAAAATTTTGGAGCACTTAAAAGACGCTCATAGTAAGAATATCAGCACAGAGATACCTAACCATATTTTGCCTTTCAAATTTGACAATGAATATTTAAGGTGCTTCATGTGtcagaatattttcaacaaatttAAAGCTCTCCAAGAACACATGCATACACATTACCGaaattatatttgcaaaatCTGCGACGCTGGATTTGTTAACCGTCATCTTCTATTATGTCACAATGAGGGCCATAAAACTGGTACCTTTGCTTGTGAACAATGCAATCTAGTTTTTGACACTGTTAGAAAGAAGAAATTGCATGAAAGAAAAATCCATAATGGCTTAAACATGCCCCACAAATGTGGATACTGCAGTGAGAGGTTCAGGGAGAATTGTCACAAAAATGAACACCTAGCGAAAGTACATGGTGTCGTTGGACCAACAATTAAATGCCAAGCTTGCGACAAGACGTTTACATTGCAGCAGACTTGGTTACTGCACATGAAAAAGTATCACTTGCTGCAGAAGAAACATGACTGCACGACATGCGACATGGCCTTCTTTTCTAAGCGGGAGCTAACAGACCACATGGTCAAACACACGGGAACGAGAGAGTTCAAATGTGAAGTTTGCAAGAAATCGTACGGCAGATTAAAGACATTAAAAGAACACGTGAAGAGGCAACACCCAGAAGATTGTTTCTATAAATgtATACGAACCATTAAAATCGAAAGGCGTTTATCAACACCTCGAGTCGAGCTGAAGATCATTCGGGGCACCAGGCAGCCTAAACTATCGGATGCCAGGAAAAACCAACAAAATCTTATGACCATTTTGCTTTGTTCCAATGCCAATCCTATCAGATCGAAGGATAGTCTTGGATACGGCTGTGCGTTTTGTCTCGAACAGTTTCAGAATCCGACCGACcttaagaaacattttttagtaGAACATAACAACGATAGATTAATTCAGTACATGACGTCCAGATTGTTTGAACATGTCGTTAAATTAGACATTACCTACTTAAGTTGTTCCCTTTGCAGCACTGGTATAGCCAAATTGGAGGACTTGATGCATCACTTGAAGGATGagcataaaaaagaaatacacaCAGACATAAACAACACTATAGTACCATTTAAATTCGACACGCCGGAACTAAGATGCGCAATTTGTTCCACGGAATATCTAAACTTCAAACTTTTACAGGAACATATGAACACTCATTTTGGATACCATTTATGCCCACTGTGTAGCCGAGGCTTTGTTACTGAGCGCCTTCTAGCCACTCACATCAGGAGGCATGACAATGGTGTATACAAATGTCAAGAGTGCGATAAAGTGTTTGGCAATAACGAGAGGTTAAAGGAACATCAGAGACGGATTCATTTAGGGTTCAACAAACGCAACAAATGTATGATATGTGATGAACGTTTCATGGattactggaggaaggtcgaTCATATGGTCAAAGTGCATGGAGCACCACCAGTAGTCATAAAATGCCAAGCTTGCGATCGCACGTTTATCAACCAGAGAGCTCTGGCGCGGCACACTAAAAAAGACCATCTTATGGAAAAAAAGCACCAATGTGAAGAATGTGATATGCGATTCTTCAGCGCTAGCGGACTAAAGCGTCATATGGCGAAGCATACAGGACTGCGCGAGTTCAGATGTGATATTTGCTTCAAATGCTATGGCAGAAAGACTACGTTAAGGGAACATATGCGTATACATGCAGACGACCGCAGGTTTGCCTGTAGCAGATGTGGTCAGGCTTTCGTACAAAAGTGCAGTTGGAAGAGTCACATGAGATCCAAACATGGCGAAGAGATGGTTTAG
- Protein Sequence
- MSNTKKYMICPKTLGKSHKTSKASLDTSQEDEIVAINKEDVVPKARQGEHLEKHRNNIREVILSSNATPIRCRGGIGYACCFCSSQFPDPADLKKHTIKDHDDKTKAIFMKGRDMYGYLVKLDITGLECNLCRSRLETLEKILEHLKDAHSKNISTEIPNHILPFKFDNEYLRCFMCQNIFNKFKALQEHMHTHYRNYICKICDAGFVNRHLLLCHNEGHKTGTFACEQCNLVFDTVRKKKLHERKIHNGLNMPHKCGYCSERFRENCHKNEHLAKVHGVVGPTIKCQACDKTFTLQQTWLLHMKKYHLLQKKHDCTTCDMAFFSKRELTDHMVKHTGTREFKCEVCKKSYGRLKTLKEHVKRQHPEDCFYKCIRTIKIERRLSTPRVELKIIRGTRQPKLSDARKNQQNLMTILLCSNANPIRSKDSLGYGCAFCLEQFQNPTDLKKHFLVEHNNDRLIQYMTSRLFEHVVKLDITYLSCSLCSTGIAKLEDLMHHLKDEHKKEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPLCSRGFVTERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMRFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACSRCGQAFVQKCSWKSHMRSKHGEEMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774667;
- 90% Identity
- iTF_00457414; iTF_00458255; iTF_00774667; iTF_00621422; iTF_00778186;
- 80% Identity
- -