Haoe011616.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000305.1:1909723-1914958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.016 0.95 10.2 1.0 1 23 118 141 118 141 0.95 2 19 0.6 36 5.3 0.0 2 23 168 190 167 190 0.93 3 19 0.04 2.4 8.9 3.4 2 23 213 234 212 234 0.97 4 19 0.27 16 6.3 1.0 1 17 238 254 238 260 0.86 5 19 0.15 9.2 7.1 0.7 1 23 265 288 265 288 0.95 6 19 0.95 57 4.6 6.5 1 23 295 318 295 318 0.95 7 19 0.0026 0.15 12.7 0.9 2 23 326 348 325 348 0.96 8 19 0.0014 0.082 13.6 2.1 1 23 354 376 354 376 0.95 9 19 0.00014 0.0086 16.6 2.0 1 23 382 405 382 405 0.98 10 19 0.31 19 6.2 0.2 3 23 473 494 471 494 0.93 11 19 0.2 12 6.7 0.5 2 23 520 542 519 542 0.93 12 19 0.078 4.7 8.0 0.4 2 23 565 586 564 586 0.96 13 19 0.00034 0.02 15.5 0.7 3 23 592 612 590 612 0.96 14 19 2.2e-06 0.00013 22.3 0.9 1 23 617 640 617 640 0.98 15 19 1.1 65 4.4 0.3 2 23 648 670 647 670 0.88 16 19 0.00013 0.0076 16.8 0.6 2 23 678 700 677 700 0.96 17 19 5.8e-06 0.00035 21.0 1.5 1 23 706 728 706 728 0.98 18 19 2.3e-05 0.0014 19.1 4.1 1 23 734 756 734 756 0.99 19 19 0.003 0.18 12.5 5.1 1 23 762 785 762 785 0.96
Sequence Information
- Coding Sequence
- ATGTGGAAGCCAAAAAACGGATTGGTACCGCTCTCGGGAAACACTAGAGGGGAAGATATAGCGAATGCCGCGCAAAAATGCCTTGAAAACAATaagattgatttaaataaaatcgtttCAATACCAACTGATGGAGCCAGAAGTATGACAGGAAAAAATAAAGGTAAATCTCACAAAACATCCAAAACATCATTGGACACCTCTCAAGAGGATGAAATTGttggtataaataaagaagataTAGTTCCTAAAGCTAGGCAAGGAGAACATTTGGAAAAACATAGAAACAATATAAGGGAAGTTATTCTTTGGTCGAACGCTACGCCGATTAGGTGTCGAGGTGGCATTGGTTATGCGTGTTGTTTTTGTTCCAGTCAGTTTCCTGATCCTGCAGACTTAAAGAAACATACGATAAAAGATCATGATGATAAGACGAAAGCAATATTTATGAAAGGCCGGGATATGTACGGGTACTTAGTTAAATTAGATATTACTGGACTAGAATGTAATCTATGTGGATCAAGCCTGGATACTCTAGAGAACATTTTGGAGCACTTAAAAGACGCTCATTATAAGAATATCAGCACAGAGATACCTAACCATATTTTGCCTTTCAAATTTGACAAAGAATATTTGAAGTGCTTCATGTGTCAGAACATTTTCAACAAATTTAAAGCTCTCCAAGAACACATGCATACACATTACcgaaattatatttgcaaaGTCTGTGACGCTGGATTTGTTAACCGCCATCTTCTATTATGTCACAATGAGGGCCATAAAACTGGTACCTTTGCTTGTGAACAATGCAACCTAGTTTTTGACACTATTAGAAAGAAGAAATTGCACGAAAGAAAAATCCATAATGGCTTCAACATGCCCCATAAATGTGGATACTGTAGTGAGAGGTTCAGGGAGAATTGTCACAAAAACGAACACTTAGCGAAAGTACATGGTGTTGTTGGACCAACAATTAAATGCCAAGCTTGCGACAAGTCATTTACATTGCAGCAGACTTGGTTACTGCACATGAAAAAGTATCATTTGCTGCAGAAGAAACATGATTGCACGAGATGCGATATGGCATTTTTTTCTAAGCGGGAGTTAACAGACCACATGGTCAAACACACGGGGACGAGAGAGTTCAAATGTGAAGTTTGCAAGAAATCGTACGGCAGATTAAAGACATTAAAAGAACACGTGAAAAGGCAACACCCAGAAGACTGTTTCTATAAATgtATACGAACCATTAAAATCGAAAGGCGTTTATCATCACCTCGAGTCGAGTTGAAGATCATTCGGGGTACCAAGGAGCCTAAACTATCGGATGCCAGGAAAAACCAACAAAATCTTATgactattttacttttttctaatGCCAATCCTATCAGGTCGAAGGATAGTCTTGGATACGGCTGTGCATTTTGTCTCGAACAGTTTCAGAATCCGACTGATCTTAAGAATCATTTTTTAGTAGAACATAACAATGACAGATTAATTCAGTACATGACATCCAGATTGTTTGAACACGTCGTTAAATTAGACATAACCCACTTAAGTTGTTCTCTTTGCAGCACAAGTATAGCAAAATTGGAAGATTTGATGCATCACTTGAAGGATGAGCATAAAAAAGCAATACACACAGACATAAATAACACTATAGTACCGTTTAAATTCGACACTTCGGAACTAAGATGCGCAATTTGTTCCACGGAATACCTAAACTTCAAACTGCTACAGGAGCATATGAACACTCATTTTGGATATCATTTATGCCCACTGTGTAGCCGAGGCTTCATTACGGAGCGCCTATTAGCCACTCACATCAGGAGACATGATAATGGTGTATACAAATGTCAAGAGTGCGATAAAGTGTTTGGCAATAACGAGAGGTTAAAGGAACATCAGAGACGGATTCATTTAGGGTTCAACAAACGCAACAAATGTATGATATGTGATGAACGTTTCATGGATTACTGGAGAAAGATCGATCATATGGTCAAAGTGCACGGAGCACCACCGGTAGTCATAAAGTGCCAAGCTTGTGACCGCACGTTTATCAATCAGAGAGCTTTGGCACGACACACCAAAAAAGATCACcttatggaaaaaaaacacCAATGTGAGGAATGTGATATGAGATTCTTTAGCGCTAGCGGATTAAAGCGTCATATGGCGAAGCATACAGGACTGCGCGAGTTCAGATGTGATATTTGCTTCAAATGCTACGGCAGAAAGACTACGTTAAGAGAACATATGCGTATACATGCAGATGACCGCAGGTTTGCCTGTTGTAGATGTGGTCAGGCTTTCGTACAAAAGTGCAGTTGGAAGAGTCATATGAGATCCAAACATGGCGAAGAAATTGTTTAG
- Protein Sequence
- MWKPKNGLVPLSGNTRGEDIANAAQKCLENNKIDLNKIVSIPTDGARSMTGKNKGKSHKTSKTSLDTSQEDEIVGINKEDIVPKARQGEHLEKHRNNIREVILWSNATPIRCRGGIGYACCFCSSQFPDPADLKKHTIKDHDDKTKAIFMKGRDMYGYLVKLDITGLECNLCGSSLDTLENILEHLKDAHYKNISTEIPNHILPFKFDKEYLKCFMCQNIFNKFKALQEHMHTHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFACEQCNLVFDTIRKKKLHERKIHNGFNMPHKCGYCSERFRENCHKNEHLAKVHGVVGPTIKCQACDKSFTLQQTWLLHMKKYHLLQKKHDCTRCDMAFFSKRELTDHMVKHTGTREFKCEVCKKSYGRLKTLKEHVKRQHPEDCFYKCIRTIKIERRLSSPRVELKIIRGTKEPKLSDARKNQQNLMTILLFSNANPIRSKDSLGYGCAFCLEQFQNPTDLKNHFLVEHNNDRLIQYMTSRLFEHVVKLDITHLSCSLCSTSIAKLEDLMHHLKDEHKKAIHTDINNTIVPFKFDTSELRCAICSTEYLNFKLLQEHMNTHFGYHLCPLCSRGFITERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKIDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMRFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACCRCGQAFVQKCSWKSHMRSKHGEEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160070; iTF_00621422; iTF_00458255; iTF_00781216; iTF_00457414; iTF_00778186;
- 90% Identity
- iTF_00781216;
- 80% Identity
- -