Dvan023536.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000318.1:2560135-2563797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.029 3.2 9.4 0.9 1 23 82 105 82 105 0.93 2 19 0.75 83 4.9 0.1 2 23 132 154 131 154 0.94 3 19 0.048 5.3 8.7 3.2 2 23 177 198 176 198 0.97 4 19 0.26 29 6.4 1.0 1 17 202 218 202 224 0.86 5 19 0.073 8.1 8.1 0.9 1 23 229 252 229 252 0.95 6 19 0.9 1e+02 4.7 6.5 1 23 259 282 259 282 0.95 7 19 0.0028 0.31 12.6 1.0 2 23 290 312 289 312 0.96 8 19 0.0013 0.14 13.6 2.1 1 23 318 340 318 340 0.95 9 19 0.00037 0.041 15.4 3.3 1 23 346 369 346 369 0.98 10 19 0.34 38 6.0 0.3 3 23 437 458 435 458 0.89 11 19 0.53 58 5.4 0.7 2 23 484 506 483 506 0.94 12 19 0.074 8.2 8.1 0.4 2 23 529 550 528 550 0.96 13 19 0.00022 0.024 16.1 0.8 3 23 556 576 554 576 0.96 14 19 7.4e-06 0.00082 20.7 0.8 1 23 581 604 581 604 0.98 15 19 1.6 1.8e+02 3.9 0.3 2 23 612 634 611 634 0.84 16 19 0.00012 0.013 16.9 0.6 2 23 642 664 641 664 0.96 17 19 6.5e-06 0.00073 20.9 1.6 1 23 670 692 670 692 0.98 18 19 2.2e-05 0.0024 19.2 4.1 1 23 698 720 698 720 0.99 19 19 0.00016 0.018 16.5 2.8 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGTCACAATGCCAATTGGCTCAAGAAAATGTTGACGAATATGTAATATGTGTAGGTAAATCTACTAAAACGCCAAAACCATCATTGGACACCTCTCAAGAAGACGGATTTGATActataaataaagaagatataGTTCCTAGAGTTAGGCAAGGAGAACAGTTGGAAAAACATAGGAGCAATATAAGGGAAATTATACTTTGGTCGAATGCTACACCGATAAGGTGTCGAGGAGGCATTGGTTATGCATGCTGCTTTTGTTCTAGTCAATTTCCTGATCCTGCAGATTTAAAGAAGCACACGATACAGGATCACGACGAGAAagcgaaagaaatatttatgaaagGGCGGGATATGTACGGATACTTAGTGAAATTGGATATTACAGGATTAGAATGTAATTTATGCGGATCGAAGCTAGAGAATCTCGAAAACATATTAGAACACTTAAAAAAtgctcataataaaaatattagcacaGAGATACCTAACCATATATTACCTTTCAAATTTGACAAAGAATATTTAAGGTGTTTtatgtgtcaaaatatatttaacaaattcaaaGCTCTTCAAGAGCACATGCACACacattatagaaattatatttgtaaagtcTGCGACGCTGGATTCGTTAACCGCCATCTTTTATTGTGTCACAATGAAGGTCATAAAACTGGTACTTTTGCTTGCGAGCAATGCAACCAAGTTTTCGATACGGTAAGGAAGAAAAAACTACACGAAAGAAAGATTCACAATGGTCTAAACATGCCCCATAAATGTGGGTATTGCAGTGAAAGGTTTAGGGAGAATTGTCATAAAAATGAACACTTGGCCAAAGTCCATGGCGTAGTTGGACCAACGATCAAGTGCCAAGCGTGTGATAAGACATTTACATTGCAGCAGACTTGGTTATTGCATATGAAGAAATATCATTTACTGCAAAGGAAACATGACTGTACCAGATGCGATATGGCCTTCTTTTCTAAACGGGAACTGACTGACCATATGGTCAAGCACACCGGCACAAGAGAGTTCAAGTGTCAAGTTTGCAAAAAATCCTACGGACGCCTGAAGACTTTGAAAGAACACACGAAGAGGCAGCATCCAGAAGATTGCTTCTACAAATgTATACGAACAATTAAAATCGAAAGGCGTTTAACAACACCTCGAGTCGAGTTGAAGATCATTCGTGGCACCAGGGAGCCAAAACTGTCGGATGCCAGGAAAAACCAACAAAATCTCATGACTATTTTGCTTTGTTCCAACGCGAATCCAATCAGATCGAAAGATAGTCTTGGATATGGTTGTGCGTTTTGTCTCGAACAGTTTCAGAATCCAACCGAcctaaaaaaacactttttaggAGAACACAACAACGACAGATTGATCCAGTACATGACGTCAAGACTTTTCGAACATGTCGTCAAATTAGATATTACCTACCTAAACTGTTCTCTTTGCAGCATGAATATAGCTAAATTGGACGATCTGATGCATCACTTGAAAAATGAgcacaaaaaagaaatacatacagATATAAATAACACTATAGTACCGTTTAAGTTTGATACTCCGGAACTCAGATGTGCGATATGttcaacggaatatcttaatttCAAACTTCTACAGGAGCATATGAACACGCATTTTGGATACCACCTATGTCCCATGTGTAGTCGAGGTTTTATTACAGAACGCCTCTTAGCCACTCACATTAGGAGACACGACAACGGAGTGTACAAGTGTCAAGAGTGCGAGAAAGTGTTTGGAAATAACGAAAGATTGAAAGAACATCAAAGGCGGATTCATTTAGGGTTCAACAAACGTAACAAGTGTATGATCTGTGATGAACGTTTCATGGattactggaggaaggtcgaCCATATGGTCAAAGTGCATGGCGCGCCGCCGGTGGTGATAAAGTGCCAAGCTTGCGACCGCACCTTTATTAATCAGAGGGCTCTAGCGCGGCACACTAAAAAGGACCATTTAATGGAAAAAAAGCATCAATGTGAAGAATGTGATATGAAATTTTTTAGCGCTAGCGGGCTAAAGCGTCATATGGCGAAGCATACAGGACTTCGGGAGTTTAGATGTGATATTTGCTTTAAGTGCTACGGCAGGAAGACTACGTTAAGAGAACATATGCGTATACATGCAGATGACCGCAGGTTTGCCTGTACTCGATGTGGTCAAGCCTTCGTACAGAAATGTAGTTGGAAAAGTCACATGAGATCTAAACATGGCGAAGAAATTGTTTAG
- Protein Sequence
- MSQCQLAQENVDEYVICVGKSTKTPKPSLDTSQEDGFDTINKEDIVPRVRQGEQLEKHRSNIREIILWSNATPIRCRGGIGYACCFCSSQFPDPADLKKHTIQDHDEKAKEIFMKGRDMYGYLVKLDITGLECNLCGSKLENLENILEHLKNAHNKNISTEIPNHILPFKFDKEYLRCFMCQNIFNKFKALQEHMHTHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFACEQCNQVFDTVRKKKLHERKIHNGLNMPHKCGYCSERFRENCHKNEHLAKVHGVVGPTIKCQACDKTFTLQQTWLLHMKKYHLLQRKHDCTRCDMAFFSKRELTDHMVKHTGTREFKCQVCKKSYGRLKTLKEHTKRQHPEDCFYKCIRTIKIERRLTTPRVELKIIRGTREPKLSDARKNQQNLMTILLCSNANPIRSKDSLGYGCAFCLEQFQNPTDLKKHFLGEHNNDRLIQYMTSRLFEHVVKLDITYLNCSLCSMNIAKLDDLMHHLKNEHKKEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPMCSRGFITERLLATHIRRHDNGVYKCQECEKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMKFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACTRCGQAFVQKCSWKSHMRSKHGEEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774667;
- 90% Identity
- iTF_00781216;
- 80% Identity
- -