Hhim009858.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius himera
Gene Symbol
Paxbp1
Assembly
GCA_013421065.1
Location
JAATLT010002110.1:35342-48473[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.62 6.3e+03 -3.4 0.0 45 95 291 338 287 347 0.63
2 2 5.5e-19 5.6e-15 55.8 0.0 3 190 491 656 489 668 0.82

Sequence Information

Coding Sequence
ATGTTTCGCAAACCAAAGAAAATTCAGAGGCGTGTGTTTTGTGCGGACGAAGATGATGACGGCGAACCTGAACCACCGCCACCACCAATTATTAGtcaaaataagaaagaaaaaccTGTTAAAAGTACTCCGACATTAAGTTTTGCTGATGAAGaagaAGAAGGTGAAGTGTTCAAGGTGAAAAAGTCCTCTCAAAGTAAGAGATTGGCAAAACGTCGGgagaaagagaaaaagaaaGTACCAGATGGTGATAATAATAGATATGACAATCACGATGATGAGgAAAAATTTGAAGATgacaaagaaaaacaaaagcaGCCAAAGAAGAAGGTAACACTAGAAGGGCTGATTCTATCCGGTCGTGAGGCATTAGCCGCAGGTGCCAATGACATGTCAGATGACAGTGACAATGAAGATAACAGGGGTTTCCATACATACCGTGCAGAATCAGTTCGAGCTGCACTGGTCCCAGGCCACATACCTGATGCTGCATTGATCCACGCGGCACGCAAGACTCGACAGCAGGCACGCGAGTTAGGTGATTTCGTACCTCTTCAAGATAATGGTCCTGGCTCCCGGCTGATAAGAGAGGACGATGCTGATGACGATGAAGACGGCAGGATACAGGTTCGAGGGTTGGACTTGCCTAGTGATAAACCTAAGCgtGGCACGGCAGCTATGGCGTCCGATGAAGAAATGAACAGTGAGGCTGATGAATGGGAGGAGCAACAGATTAAAAAAGCTGTTCCATCTATAGTTGATATAACAGCTGACACAATAGAATTAAATCCATTCGCCGTAGCCCCACCGCCGCCCAGGTTGGAAGAAATGCCTTCTCACCTGCGTCCCCTCACATCGGTCGGTCAGCCTCCTTTAACGAGTGCACAAGAACTGGTCGATGCTTTGCGAGATAGGTTAAACCAGCTACAAACAGATCGTAACACAACGCTGCAGCGCCACGAGGCGTGCTTTGAGCGGCTGTCGGCGACGCGGGCGGCGCGCGACGTGCGGCGCGCGCGCACCGCCCGCCTCGACGCCGCCTACCGGCGCGCGCAGGCCGCGCGCGGGTACGTCACCGACCTCATCGAGTGCCTGGACGAGAAGGTGAAAGCGTTAGAGGCTCGCGCGCTAGCGTTGCACCGACGTCGCTGCGAGTTCATAGTAGAGAGACGGAGAGCTGATGTAAGAGATCAGGCGCAGGATGTTCTTTCTATGGCtgCACGAACAGGCGCATCAAAACCAGTGGATTCAGAAGAGAAACGTCAACGAGCCGCCGAGCGCGAGGGACGACGGCGCGCGCGACGACTGCGACGCGAGGCGGCCGGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGAGTCAATCCGCGAAGCCTCGTCCCGCCTATTTGCGGACGCGCTAGCAGCGTGGCGTGGCGTTCGCGGTGTTTGTGCCCGCCTCGCCCGTCTCCGGCGACGGTTACCGGCGCTCTACGCCGACGCCTACCTCGCTCACTGCCTTCCAAAACTGATAGCTCCTTATGTGAGACACGAGCTAATATTATGGAACCCTCTAGCTGATGAAGACAACGAGGACTATGAAAAGATGGACTGGTACAAatGCCTCATGATGTACGGGGTGACGGTGGAAAAGCTGTCCAGTGATTCTGAACAATCTGATGATGAACAACCTTCTCCTGTTACTGAGGAGTCGGTGAGAGAAGACCAGGACCTGATGCTGGTGCCAACTATTATTGATAAGGTTGTCCTACCTAAGATTGCTGAGCTCGTGGAGCAGGCGTGGGACCCGCTGAGCGTGCGCGCGTgcgtgcgcctgcgccacgtgCTGCTGCGCGCGGCGGCGCTgccggcggcgggcggcggcgcgctgCGGCGCGTgtgcgcggcggcgcgcgcgcggctGGCGGCGGCGCTCGCGGCCGACGTGTTCCTGCCCGCGCTGCCTCCGCATATTCTAGAAGGTCCTGGTGGATCTTTCTGGAAGCGTTGTCTCGGCGGCGGGGTGCGATTGCTGCGTGCGGCGCTCGCCCTCTCTGCGCCGCCCGCGGCACTTAATGCCGATCCGCTTGCTTTGTCGTTGATAGAGACCCTGTGctgcgcggcgggcgcggcgccgggcgcggcggcggcggcggcggcggccgcGCTCGCCGACACGCTGCCGCGCTCCGGCGAGCTGCGCGCGCGCGCTCTGCGCCGCCTCGCCCAGCTCGCTCAGCTCGCTCTGACGCGCTTGCAGACCGACAACGCCATGCACCTaaaaGGCCTAGAACAAGCAAGAGGTGTCCTAGCAGAAGCGCGAGCAGTTGAATGA
Protein Sequence
MFRKPKKIQRRVFCADEDDDGEPEPPPPPIISQNKKEKPVKSTPTLSFADEEEEGEVFKVKKSSQSKRLAKRREKEKKKVPDGDNNRYDNHDDEEKFEDDKEKQKQPKKKVTLEGLILSGREALAAGANDMSDDSDNEDNRGFHTYRAESVRAALVPGHIPDAALIHAARKTRQQARELGDFVPLQDNGPGSRLIREDDADDDEDGRIQVRGLDLPSDKPKRGTAAMASDEEMNSEADEWEEQQIKKAVPSIVDITADTIELNPFAVAPPPPRLEEMPSHLRPLTSVGQPPLTSAQELVDALRDRLNQLQTDRNTTLQRHEACFERLSATRAARDVRRARTARLDAAYRRAQAARGYVTDLIECLDEKVKALEARALALHRRRCEFIVERRRADVRDQAQDVLSMAARTGASKPVDSEEKRQRAAEREGRRRARRLRREAAGAASHRDGDSSDDELPPALCHQCAQDTESIREASSRLFADALAAWRGVRGVCARLARLRRRLPALYADAYLAHCLPKLIAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGVTVEKLSSDSEQSDDEQPSPVTEESVREDQDLMLVPTIIDKVVLPKIAELVEQAWDPLSVRACVRLRHVLLRAAALPAAGGGALRRVCAAARARLAAALAADVFLPALPPHILEGPGGSFWKRCLGGGVRLLRAALALSAPPAALNADPLALSLIETLCCAAGAAPGAAAAAAAAALADTLPRSGELRARALRRLAQLAQLALTRLQTDNAMHLKGLEQARGVLAEARAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01181902; iTF_00621249; iTF_00781039; iTF_00780265; iTF_00781845; iTF_00774503; iTF_00457247; iTF_00458065; iTF_00782656; iTF_00775266;
90% Identity
iTF_00781845;
80% Identity
-