Hcha001993.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius charithonia
Gene Symbol
PAXBP1
Assembly
GCA_030704555.1
Location
CM060809.1:31881693-31892274[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.1e-18 5.4e-14 53.0 0.0 3 190 650 817 648 829 0.79

Sequence Information

Coding Sequence
ATGTTTCGCAAACCAAAGAAGATTCAGAGGCGTGTGTTTTGTGCGGACGAGGATGATGACGGCGAACCtgaaccaccaccaccaccaattATTAGtcaaaataagaaagaaaaaccTGTTAAAAGTACTCCAACATTAAGTTTTGCTGATGAAGaaCAAGAAGGTGAAGTGTTCAAGGTGAAAAAGTCCTCTCAAAGTAAGAGATTAGCAAAACGTCGGgagaaagagaaaaagaaattacCAGATGGTGATAATAATAGATATGACAATCACGATGATGAGgAAAAATTTGAAGATGACAAAGAAAAACATAAGCAGTCAAAGAAGAAGGTAACACTAGAAGGGCTGATCCTATCTGGTCGGGAGGCATTAGCCGCAGGTGCCAATGACATGTCAGATGATAGTGACAATGAAGATAACAGGGGTTTCCATACATACCGTGCAGAATCAGTTCGAGCTGCACTGGTCCCAGGCCACATACCAGATGCTGCATTGATCCACGCGGCACGCAAGACTCGACAGCAGGCACGGGAGTTAGGTGATTTCGTACCTCTTCAAGATAACGGTCCTGGCTCCCGGTTGATAAGAGAGGATGATGCTGATGACGATGAAGACGGCAGGATACAGGTCCGAGGGTTGGACTTGCCTAGTGATAAACCTAAGCgtgGTACGGCAGCTATGGCATCCGATGAAGAAATGAACAGTGAGGCTGATGAATGGGAGGAGCAACAGATTAAAAAAGCTGTTCCATCTATAGTTGATATAACAGCCGACACAATAGAATTAAATCCATTCGCCGTAGCTCCACCGCCGCCCAGGTTGGAAGAAATGCCTTCTCACCTGCGTCCCCTCACATCAGTCGGTCAGCCTCCTTTGACGAGTGTACAAGGACTTGTCGATGCTTTGCGAGATAGGTTAACCCAGCTACAAACagagcgtaactcaacgctgcagcGCCACAACGCGTGCGCCGAGCGGCTGTCGGCGACGCGGGCGGCGCGCGACGTGCGGCGCGCGCGCACCGCCCGCCTCGACGCCGCCTACCGGCGCGCACAGGCCGCGCGCGGGTACATCACCGACCTCATCGAGTGCTTGGACGAGAAGatGCCAGAATTAGAAGCATTAGAGGCTCGCGCGCTAGCGTTGCATCGACGTCGCTGTGAGTTCGTTGTAGAGAGGCGGAGGGCTGATGTAAGAGATCAGGCGCAGGATGTTCTTTCTATGGCtgCACGAACAGGAGCATCAAAACCAGTGGATTCGGAAGAGAAACGTCAACGAGCCGCCGAGCGCGAGGGACGACGACGCGCTCGACGACTGCGGCGCGAGGCGGCCGGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGGTCAGTGCCACTTGTTGTTGTTGTGCTCGTATAGCACGAGCGCGAGGCGGCCCGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGCACGAGCGCGAGGCGGCCCGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGGTCAGTGCCACTTGTTGTTGTTGTGCTCGTATAGCACGAGCGCGAGGCGGCCCGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGCACGAGCGCGAGGCGGCCCGCGCGGCCTCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTGCCACCAGTGCGCGCAGGACACCGAGTCAATCCGCGAAGCTTCGTCCCGCCTATTCGCGGACGCGCTAGCAGCGTGGCGTGGCGTTCGCGGTGTTTGTGCCCGCCTCGCGCGACTCCGCCGACGGTTACCGGCGCTGTACGCCGACGCCTACCTCGCTCACTGCCTACCCAAACTGATAGCTCCTTATGTGAGACACGAGttaatattatgGAACCCTCTAGCTGATGAAGACAACGAGGACTATGAAAAGATGGACTGGTACAAATGTCTCATGATGTATGGGGTGACGGTGGAAAAGCTATCCAGTGATTCTGAACAATCAGATGATGAACAACCTTCTCCTGTTACTGAGGAGTCGGTGAGGGAAGACCAGGACCTGATGCTGGTGCCAACTATTATTGATAAGGTTGTCCTACCTAAGATTGCTGAGCTAGTGGAGCAGGCGTGGGACCCGCTGAGCGTGCGCGCGTgcgtgcgcctgcgccacgtgCTGCTGCGCGCGGCGACGCTaccggcggcggcggcgggcggcggcgcacTGCGGCGCGTgtgcgcggcggcgcgcgcgcggctGGCGGCGGCGCTCGCGGCCGACGTGTTCCTGCCCGCGCTGCCCCCGCATATTTTAGAAGGTCCTGGTGGATCTTTCTGGAAGCGTTGTCTCGGCGGCGGGGTGCGATTGCTGCGTGCGGCGCTCGCCCTCTGTGCTCCGCCCGCGGCACTTAACGCCGATCCGCTCGCTTTGTCGTTGATAGAGACGCTGAGctgcgcggcgggcgcggcgccggGCGCgcaggcggcggcggcggcggccgcGCTCGCCGACACGCTGCCGCGCTCCGGCGAGCTGCGCGCGCGCGCGTTGCGCCGCCTCGCTCAGCTCGCTCAGCTCGCCCTGGCGCGCTTGCAGACCGACAACGCCATGCACCTaaaAGGCCTAGAACAAGCGAGAGGTGTCCTAGCAGAAGCGCGAGCAGTTGAATGA
Protein Sequence
MFRKPKKIQRRVFCADEDDDGEPEPPPPPIISQNKKEKPVKSTPTLSFADEEQEGEVFKVKKSSQSKRLAKRREKEKKKLPDGDNNRYDNHDDEEKFEDDKEKHKQSKKKVTLEGLILSGREALAAGANDMSDDSDNEDNRGFHTYRAESVRAALVPGHIPDAALIHAARKTRQQARELGDFVPLQDNGPGSRLIREDDADDDEDGRIQVRGLDLPSDKPKRGTAAMASDEEMNSEADEWEEQQIKKAVPSIVDITADTIELNPFAVAPPPPRLEEMPSHLRPLTSVGQPPLTSVQGLVDALRDRLTQLQTERNSTLQRHNACAERLSATRAARDVRRARTARLDAAYRRAQAARGYITDLIECLDEKMPELEALEARALALHRRRCEFVVERRRADVRDQAQDVLSMAARTGASKPVDSEEKRQRAAEREGRRRARRLRREAAGAASHRDGDSSDDELPPALCHQCAQDTGQCHLLLLCSYSTSARRPARPRTATATPATTSCRPRCATSARRTPHEREAARAASHRDGDSSDDELPPALCHQCAQDTGQCHLLLLCSYSTSARRPARPRTATATPATTSCRPRCATSARRTPHEREAARAASHRDGDSSDDELPPALCHQCAQDTESIREASSRLFADALAAWRGVRGVCARLARLRRRLPALYADAYLAHCLPKLIAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGVTVEKLSSDSEQSDDEQPSPVTEESVREDQDLMLVPTIIDKVVLPKIAELVEQAWDPLSVRACVRLRHVLLRAATLPAAAAGGGALRRVCAAARARLAAALAADVFLPALPPHILEGPGGSFWKRCLGGGVRLLRAALALCAPPAALNADPLALSLIETLSCAAGAAPGAQAAAAAAALADTLPRSGELRARALRRLAQLAQLALARLQTDNAMHLKGLEQARGVLAEARAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00779516;
90% Identity
-
80% Identity
-