Basic Information

Gene Symbol
nfxl1
Assembly
GCA_037355905.1
Location
JBAIZZ010000183.1:442213-444690[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 2e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 18 0.01 1.1e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 18 3.1e-07 0.0031 17.6 15.9 3 19 186 202 185 202 0.95
4 18 7.6e-07 0.0076 16.4 15.5 3 18 239 254 237 255 0.91
5 18 1.7e-08 0.00017 21.7 10.6 1 19 290 308 290 308 0.98
6 18 1e-06 0.01 16.0 18.5 3 19 345 361 337 361 0.85
7 18 1.2 1.2e+04 -3.4 0.4 7 11 365 369 365 369 0.84
8 18 6.7e-05 0.67 10.2 20.3 1 18 395 412 395 413 0.97
9 18 1.5e-08 0.00015 21.9 15.6 1 19 422 440 422 440 0.99
10 18 2 2e+04 -4.1 1.8 6 10 469 473 468 474 0.53
11 18 0.051 5.1e+02 1.0 5.5 9 19 488 498 486 498 0.87
12 18 0.026 2.6e+02 1.9 8.8 3 12 509 518 508 518 0.90
13 18 0.41 4.1e+03 -1.9 3.4 14 18 547 551 547 552 0.85
14 18 0.19 1.9e+03 -0.8 0.5 8 12 568 572 567 579 0.80
15 18 5.5e-06 0.055 13.7 4.6 1 11 588 598 588 599 0.97
16 18 8.7e-06 0.087 13.0 15.6 3 18 629 645 628 646 0.86
17 18 0.99 9.9e+03 -3.1 1.0 6 10 677 681 676 681 0.88
18 18 2.3e-07 0.0023 18.1 11.0 1 16 687 701 687 707 0.91

Sequence Information

Coding Sequence
ATGGCTAGAAGATATCGTGATGCTGCAGCTAAATTGCAGCAAAACGTTCAGAAACATCTTGAAGTGATGAAAGATCTTTCTTCTTCTGAAGATGATGAGCCAGTTGAGTCAAGTGTCCTGGATACTGTATTCCAGAGCTACTGGCAGGGTGGCGGCGATACACAAATGCTTAATAGGACTAAACATCTACTAGAAGAAGCAATAAGTGGCCGAGCCGTAACCTGCTTGATTTGCATTGGATCTATCAAAAGAACCGACGCTATATGGACATGCGAtcattgttattgttattttcatcTATCTTGCATACGGAAATGGTCAAATGATAGTATAAGTCTATGCAATGAAGAAAGTCATGGCCCAATTGCTGTGTTCAAgcctaaaaaaattgaatggtGCTGCCCAAAGTGTAGAAATTCCTATAATAAAGAGGACATACCACGTAAATATCGCTGTTTCTGCAGTAAAACTGATGACCCCCCATTCCATCCGTGGTTAGTACCTCATACTTGTGGGGAAGTGTGTGGGAAATGGTTGTCAGTGGGCGATAATTGTAAGCATAAATGTCTTTTATTATGTCACCCTGGGCCTTGTCCACCATGTCCTCAAACTGTTAATGGAGTTTGCTTTTGTAACAAAGAACATAAGAGAGTAAGATGTAGTGCTGCCCACTGGTCATGTAAACAAAGATGTAACAAGAACTTGCCCTGTAAATCTCATAAGTGTGAGGGTATATGTCATCCTGGGGAATGCCCACCATGTAACTATACAAGTCTGCAATTGTGTCAATGTGGAGAAGAAAAGATAAAACGCCCATGCAACAGTTTAGTATGGCAATGCCAAAAACAGTGTAAAAAGCCATTTGCATGTGGTTTCCATAAATGTGACAGAGTATGTCATACCGGGAGCTGTGGACTGTGTCCCAATTCTGGAGTTAGATCTTGTCCCTGTGGAGCTAACCAGCGTTACATCCAGTGTCCGGATACTATTGAAACTTGCCTTGGAACTTGTGGAAGGAAATATGAGGACTGTCATCATACTTGTCCATCTAAATGCCATAAAGGACAATGCCCACCTTGTCAAGTGCAGATTGAAAAGAAATGTCATTGTTCAACTCATACAAGACCACTGCCCTGTAGCAGAGAGTTCAGATGTGAGACTAAATGTAGAGGAGTCAGACCTTGTGGCAAACATGGATGCGGAAGAAAATGTTGTAATGGGAACTGTCCTCCATGTGAAAAACTGTGTGATAAGTCTTTGCAATGCGGCCGCCATAAATGTACTATGATTTGCCATCATGGGCCATGCTATCCGTGCCCTCTTGAATCTAAAGTGACTTGCCGCTGCAAAGAGACATACATAACAGTTCCATGTGGTAGAGAGAGACACACAAGACCACCTAAATGCAATCATccatgtaaaataaagtataaatgtgGCCATATTGATGAAAACAAACATTCCTGTCATTTTAAGGATTGTCCTCCATGCAAAGCAATTTGCAACAAGGCTTATAAGAAATGTGAACATAAATGTACATCAACATGCCATGAATATGTACTGGTTACATTCAAACAAATCGAAAAGCCTGCTACACCGTGGGAAGCTCAGCCACCAAAATCAAAAATAGTTGCGTTAGAATGTCCACCATGTGATGCTCCTATTACAGTAACATGTTTTGGAGAACATGAAACTGATGACCAACCTTGTCACAAAGCTAGTCGTCGACCATGTGGGAGAGAATGTGGTAAATCTCTGGCTTGTGGGAACCATTCATGTGAATTATTATGTCATTTATACAGTCAAGATGCTGATTATCCAAATGTGCCTTTTATGTGTAAAGCTTGCCACAGAGAATGTTCCAAACTCCGTCCAGACAAATGTAAACACAAATGTGCTAAGAGGGTCTGTCATCCTGGCCCATGTCCACCTTGTGAGATCATGGAAAGAGTTTCTTGTCATTGTGGTGTAACAGAATTATATTTCCGCTGTAAAGAATTAGCAAACACTAATGAGGTAGCACTAAgttgtaaacaaatatgtcCAAAGAATTTGGAATGTGGACATCGTTGCAAAAACATCTGTCATTCTGGTCCATGTGGAGTAAACCAAATCTGTACTAAAAAGACTAAAATTCTCTGCCCATGTGGTAATATAAAGAGAGAGGCTCCATGTAATGCAGTTAGAAATGCAGAAATCAAAGTAGGGTGTGATGCCAGCTgtgaaacaaagaaaatagctGCAACATTAGAAAAAGAACAACAAGAGATAAGATTAAAACAACTTGAGGAAGAGAAAAATCGTAAAGAACTAGAAGAATATGAATGGAAATTAAGtggaaaaaagaagaaatataaagaaaagaaattgatTGTCAATACAGATAACCGAAATGTGTTGCAGAAATATTGGGTTCCTATTTTATCGACAGCAGTTGTAATTTTAGCTGGTGctatattctgtatatttagtgtgtaa
Protein Sequence
MARRYRDAAAKLQQNVQKHLEVMKDLSSSEDDEPVESSVLDTVFQSYWQGGGDTQMLNRTKHLLEEAISGRAVTCLICIGSIKRTDAIWTCDHCYCYFHLSCIRKWSNDSISLCNEESHGPIAVFKPKKIEWCCPKCRNSYNKEDIPRKYRCFCSKTDDPPFHPWLVPHTCGEVCGKWLSVGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCNKEHKRVRCSAAHWSCKQRCNKNLPCKSHKCEGICHPGECPPCNYTSLQLCQCGEEKIKRPCNSLVWQCQKQCKKPFACGFHKCDRVCHTGSCGLCPNSGVRSCPCGANQRYIQCPDTIETCLGTCGRKYEDCHHTCPSKCHKGQCPPCQVQIEKKCHCSTHTRPLPCSREFRCETKCRGVRPCGKHGCGRKCCNGNCPPCEKLCDKSLQCGRHKCTMICHHGPCYPCPLESKVTCRCKETYITVPCGRERHTRPPKCNHPCKIKYKCGHIDENKHSCHFKDCPPCKAICNKAYKKCEHKCTSTCHEYVLVTFKQIEKPATPWEAQPPKSKIVALECPPCDAPITVTCFGEHETDDQPCHKASRRPCGRECGKSLACGNHSCELLCHLYSQDADYPNVPFMCKACHRECSKLRPDKCKHKCAKRVCHPGPCPPCEIMERVSCHCGVTELYFRCKELANTNEVALSCKQICPKNLECGHRCKNICHSGPCGVNQICTKKTKILCPCGNIKREAPCNAVRNAEIKVGCDASCETKKIAATLEKEQQEIRLKQLEEEKNRKELEEYEWKLSGKKKKYKEKKLIVNTDNRNVLQKYWVPILSTAVVILAGAIFCIFSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2