Basic Information

Insect: Harpalus rufipes
Gene Symbol: UBTF
Assembly: GCA_951394225.1
Location: OX596290.1:13919255-13924293[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.7 4.2e+03 0.1 0.7 40 65 52 77 45 80 0.87

2 7 1.1e-10 1.7e-07 33.4 0.1 1 47 173 219 173 244 0.84

3 7 3.6e-05 0.056 15.7 0.5 1 68 249 315 249 316 0.93

4 7 6.3 9.7e+03 -1.1 0.0 2 13 348 359 347 365 0.87

5 7 7.4 1.1e+04 -1.3 3.9 45 68 368 391 361 392 0.91

6 7 0.81 1.2e+03 1.8 0.6 4 44 464 494 461 518 0.58

7 7 8.1 1.3e+04 -1.4 0.0 20 50 619 645 613 652 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.7	4.2e+03	0.1	0.7	40	65	52	77	45	80	0.87
2	7	1.1e-10	1.7e-07	33.4	0.1	1	47	173	219	173	244	0.84
3	7	3.6e-05	0.056	15.7	0.5	1	68	249	315	249	316	0.93
4	7	6.3	9.7e+03	-1.1	0.0	2	13	348	359	347	365	0.87
5	7	7.4	1.1e+04	-1.3	3.9	45	68	368	391	361	392	0.91
6	7	0.81	1.2e+03	1.8	0.6	4	44	464	494	461	518	0.58
7	7	8.1	1.3e+04	-1.4	0.0	20	50	619	645	613	652	0.71

Sequence Information

Coding Sequence: ATGACGCAGGATGGATCCATGAGATCAAACAGAGATTCAGATTCAGATTTGTGTATTGAAGAAAATGATTTACCATATGATAGACGATCGAGTACGCATAGTATGGTATCGAAACGAAAATCTGCTAATAAGAATGAAGCTGGGCCTTCCAAAAAGAAGGTAAAAGAAGTTGAAAAGGTCAATTACGAAGATGGAAGCCCCCaacagaagaaaaaaattaaacagcaGACTGCTGCGGTAGAAAGCGATGTCGAGTCGGATCTGGACATTACTATAGTGAAGGAAGAAATACCAGatgaagatgaaaataaaaattgcTTTGTGTACAATTTAGACGGTTTATTTTCGTTCGGCCCTTATAGTGGCTCTGAGTGTCGAATAATGTGGGAAGGTATTCAGAAAAGAGTAAGACGTTATCGTATTTTAAAAGAATTAGTAGACGATGCGAAGGAATGGGTTTTAAAACCGTGGACTAACTTTTACAGGGGACGAAAAATGAATCGACATCCAGATTTACCTAGGCGGCCTTTATCAacgtacattattttttatttgaaacaaaaagaCAAAGTATTGCTAGAACATCCAGGGATGGATATGATGGAACTTTCAAAACATATAGCTGCATTGTACAAGCAACTATCAGAATTTAGtcgATTGCATCCCGAATTAGTccgaacaaaattcaaaaaagacAAGCAAACTGCGAGGCAAACAGCTCCTACACGTCATTATAATAACGCCCCTTCAAAACCACTTAGCCCTTTTAAACTTTACTGTCAAGATATACTAAAACGAGTCGAACATGATGCAGACTTTGACAAAGCATCATGCATAGAAAGTTGTAAAGAACAGTGGCGTACAATGAGTGACAAAAACAAAGTGTTTTGGATAAATTGGTCATTAGATAAAGAAACCAAGTACCAAGAAGAACTGAAGAAATATGTAGCAGAGAATCCCGAGTATATACCGACGGGCTACAAGTCATTAGTAACTAAAGACGAAAGGGCTATAAAAGAAAGAATGGCTGGGAAGCCAGAAAAGCCACCAAACTCAGCATATAGCCTCTTTTCAAGACTTATGCTAGTCAGTGAAGATGTGAAGAAAAAGAAAGAATACACGGATCGTGTAAAACATATGTTGgaacaatataaattacaatacgcAGAATACCTAGAATCACTTCCTGAGGATGAAAGACAAATAGAAAGAAAAGGGAAAACACCTAAAACAAAACCTAATTCGACTGAAAAGGAATCTGATGAAAAAGAGGAagcgaaagagaaaaaaataagtaaatctGTTACTccaaagaaaaagagaaaaccCAAGCAAAAGCGGCCATTAAAGAACAACAACAATTTGTATGAAGGGGAACCCCCTCCTCCACCTGCAACTCCATATTTGTTATTCCTCCAAACATACAAGAAGCACTATCCACATAAAAAAGATTCAGCAAAGCAGTGGTCCCTTCTGCCCGATGATAAAAAAGATTTCCATCGGCAAATCCTAATCGATATGAAAAGAATTTATATAGAGGGTTACGAAAACTTCTTAAAGGGTTTAAGTCAAGAAGAGCTCAAAGAGTATTCGGAATGGAAGAAGCAAAACCagaatttgttaacaaattcaaaaaattcagATGACGAAAATAAATCGGACaaagatgatgatgatgatgatgatgatgataaaCTAGAAAAGGATGAGAGTGAAGAATTGTCAAATGCAGATCTGATTGAACTAACAACCGATAGCAACGAAAATGAAAGTGGAAACGAGGATAGTGAGTCGGAagtaagtcagatagaaaaaataTCGCATAGAGAAAGTGTGGAATGCTTGAGATTATATGTTGAACAACAACCGGAAGCTAGTGCGACAGACGTACTTCTTATTAAAAGATGGAAGGATATTGCAGCTAAAAAACTATACCAACTTAGGTCAAACCAATTAACATTGGATTCGTTTatatattaa
Protein Sequence: MTQDGSMRSNRDSDSDLCIEENDLPYDRRSSTHSMVSKRKSANKNEAGPSKKKVKEVEKVNYEDGSPQQKKKIKQQTAAVESDVESDLDITIVKEEIPDEDENKNCFVYNLDGLFSFGPYSGSECRIMWEGIQKRVRRYRILKELVDDAKEWVLKPWTNFYRGRKMNRHPDLPRRPLSTYIIFYLKQKDKVLLEHPGMDMMELSKHIAALYKQLSEFSRLHPELVRTKFKKDKQTARQTAPTRHYNNAPSKPLSPFKLYCQDILKRVEHDADFDKASCIESCKEQWRTMSDKNKVFWINWSLDKETKYQEELKKYVAENPEYIPTGYKSLVTKDERAIKERMAGKPEKPPNSAYSLFSRLMLVSEDVKKKKEYTDRVKHMLEQYKLQYAEYLESLPEDERQIERKGKTPKTKPNSTEKESDEKEEAKEKKISKSVTPKKKRKPKQKRPLKNNNNLYEGEPPPPPATPYLLFLQTYKKHYPHKKDSAKQWSLLPDDKKDFHRQILIDMKRIYIEGYENFLKGLSQEELKEYSEWKKQNQNLLTNSKNSDDENKSDKDDDDDDDDDKLEKDESEELSNADLIELTTDSNENESGNEDSESEVSQIEKISHRESVECLRLYVEQQPEASATDVLLIKRWKDIAAKKLYQLRSNQLTLDSFIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00768268;
90% Identity: iTF_00768278;
80% Identity: -