Hruf059292.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- ubtf-a
- Assembly
- GCA_951394225.1
- Location
- OX596290.1:15439738-15443242[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 6.6 1e+04 -1.1 0.8 40 65 18 43 12 46 0.84 2 6 1e-16 1.6e-13 52.7 2.4 1 68 181 248 181 249 0.98 3 6 4.4e-05 0.068 15.5 1.0 1 68 280 346 280 347 0.93 4 6 6.3 9.7e+03 -1.1 0.2 2 13 379 390 378 401 0.87 5 6 7 1.1e+04 -1.2 2.5 45 68 398 421 392 422 0.89 6 6 0.44 6.8e+02 2.6 0.7 33 52 521 540 499 556 0.60
Sequence Information
- Coding Sequence
- ATGGTATCGAAACGAAAATCTGCTAATAAGAATGAAGCTGGGCCTTCCAAAAAGAAGGTAAAAGAAGTTGAAAAGGTCAATTACAAAGATGGGAGCCCCCaacagaagaaaaaaattaaacagcaGACTGCTGCGGTAGAAAGCGATGTCGAGTCGGATCTGGACATTAGTATAGTGAAGGAAGAAATACCAGatgaagatgaaaataaaaataataatgttggtGAAATTGCTCACTTGAACGCAGATTTGTTACCGTGGCCACAAAAACACATGGAAGAACTTTTAAGGAAAATAGAATCCAAACTTCCAAAGCTAGAAAAATTGACATACAAATCTCGAGTGGAGAAAATTGAGTGGAAtgatTTAGCGTTCGGCCCTTATAGTGGCTCTGAGTGTCGAATAATGTGGGAAGGTATTCAGAAAAGAGTAAGACGTTATCGAATTTTAAAAGAATTAGTAGACGATGCGAAGGTATGGGTTTCAAAACCGTGGACTAACTTTTACAGGGGACCAAAAATGAATCGACATCCGGATCTACCTAGGCGGCCTTTATCAACgtatatgattttttatttgaaaaaaaaagacaAAGTATTGCTAGAACATCCAGGGATGGATATGATGGAACTTTCTAAACATGTAGCTGAATTGTACAAGCAACTATCAGTTAAATCTAAAATAAAGTACAAAGAAATGGCTGCTATTCAAAAAACGGAATACGTTGAAAAAATGAAGGAATTTAGtcgATTGCATCCCGAACTAGTCCGAACAAAATTCAAAAGAGACAAGCAAACTGCGAGGCAAACAGCTCCTACACGTCATTATAATAACGCCCCTTCAAAACCACTTAGCCCTTTTAAACTTTACTGTCAAGATAAAGTAAAACGAGTCGAACATGATGCAGACTTTGACAAAGCATCATGCATAGAAAGTTGTAAAGAACAGTGGCGTACAATGAGTGACAAAAACAAAGTGTTTTGGATAAATTGGTCATTAGATAAAGAAACCAAGTACCAAGAAGAACTGAAGAAATATGTAGCAGAGAATCCCGAGTATATACCGACGGGCTACAAGTCAGTAGTAACTAAAGACGAAAGGGCTATAAAAGAAAGAATGGCTGGGAAGCCAGAAAAGCCACCAAACTCAGCATATAGCCTCTTTTCAAGACTTATGCTAGTCAGTGAAGATGTGAAGAAAaaagaatacacggATCGTGTAAAACATATGTTAGAACAATATAAAGTACAATACGCAGAATACCTAGAATCACTTCCTGAGGATGAAAGACAAATGGAATTATTGTTAAACAGCCAACCAAAAAGAAAAGCGAAAACACCTAAAACAAAACCTAATTCGACTGAAAAGGAATCTGATGAAAAAGAGGAAGCGAAAGAGAAAAAAACAAGTAATTCTGTTACTccaaagaaaaagagaaaaccCAAGCGAAAGCGGCCATTAAAgaacaacaataatttatatgaaGGGGAACCCCCTCCTCCACCTGCAACTCCATATTTGTTATTCCTCCAAACATACAAGAAGCACTATCCACATAAAAAGGATTCAGCAAAGCAGTGGTCCCTTCTGCCCGATGATGAAAAACATTTCCATCGGCAAATCTTAACCGATATGAAAAGAATTTATATAGAGGGTTACGAAAACTTCTTAAAGGGTTTAAGTCAAGAAGAGCTCAAAGAGTATTCGGAATGGAAGAAGCAAAACCAGAATTTGctaacaaattcaaaaaattcagATGACGAAAATAAATCGGACaaagatgatgatgatgatgatgatgatgatgatgatgatgataaaCTAGAAAAGGATGAGAGTGAAGAATTGTCAAATGCAGATCTGATTGAACTAACAACCGAGAGTAACGAAAATGAAAGTGGAAACGAGGATAGTGAGTCGGAagtaagtcagatagaaaaaataTCGCATAGAGAAAGTGTGGAATGCTTGAGTAAGGTACTATTATAA
- Protein Sequence
- MVSKRKSANKNEAGPSKKKVKEVEKVNYKDGSPQQKKKIKQQTAAVESDVESDLDISIVKEEIPDEDENKNNNVGEIAHLNADLLPWPQKHMEELLRKIESKLPKLEKLTYKSRVEKIEWNDLAFGPYSGSECRIMWEGIQKRVRRYRILKELVDDAKVWVSKPWTNFYRGPKMNRHPDLPRRPLSTYMIFYLKKKDKVLLEHPGMDMMELSKHVAELYKQLSVKSKIKYKEMAAIQKTEYVEKMKEFSRLHPELVRTKFKRDKQTARQTAPTRHYNNAPSKPLSPFKLYCQDKVKRVEHDADFDKASCIESCKEQWRTMSDKNKVFWINWSLDKETKYQEELKKYVAENPEYIPTGYKSVVTKDERAIKERMAGKPEKPPNSAYSLFSRLMLVSEDVKKKEYTDRVKHMLEQYKVQYAEYLESLPEDERQMELLLNSQPKRKAKTPKTKPNSTEKESDEKEEAKEKKTSNSVTPKKKRKPKRKRPLKNNNNLYEGEPPPPPATPYLLFLQTYKKHYPHKKDSAKQWSLLPDDEKHFHRQILTDMKRIYIEGYENFLKGLSQEELKEYSEWKKQNQNLLTNSKNSDDENKSDKDDDDDDDDDDDDDKLEKDESEELSNADLIELTTESNENESGNEDSESEVSQIEKISHRESVECLSKVLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768263; iTF_00768266; iTF_00768267; iTF_00768271; iTF_00768278; iTF_00768279; iTF_00768253;
- 90% Identity
- iTF_00768266;
- 80% Identity
- -