Basic Information

Insect: Harpalus rufipes
Gene Symbol: ubtf-a
Assembly: GCA_951394225.1
Location: OX596290.1:12067017-12070262[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.5 3.9e+03 0.2 0.7 40 65 18 43 11 46 0.87

2 7 3.8 5.9e+03 -0.4 0.1 11 30 89 108 88 121 0.80

3 7 1e-10 1.6e-07 33.5 0.1 1 47 160 206 160 231 0.84

4 7 3.3e-05 0.051 15.9 0.5 1 68 236 302 236 303 0.93

5 7 5.8 9e+03 -1.0 0.0 2 13 335 346 334 352 0.87

6 7 6.1 9.5e+03 -1.0 3.7 45 68 355 378 350 379 0.91

7 7 0.22 3.4e+02 3.6 0.8 2 48 449 485 448 505 0.58

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.5	3.9e+03	0.2	0.7	40	65	18	43	11	46	0.87
2	7	3.8	5.9e+03	-0.4	0.1	11	30	89	108	88	121	0.80
3	7	1e-10	1.6e-07	33.5	0.1	1	47	160	206	160	231	0.84
4	7	3.3e-05	0.051	15.9	0.5	1	68	236	302	236	303	0.93
5	7	5.8	9e+03	-1.0	0.0	2	13	335	346	334	352	0.87
6	7	6.1	9.5e+03	-1.0	3.7	45	68	355	378	350	379	0.91
7	7	0.22	3.4e+02	3.6	0.8	2	48	449	485	448	505	0.58

Sequence Information

Coding Sequence: ATGGTATCGAAACGAAAATCTGCTAATAAGAATGAAGCTGGGCCTTCCAAAAAGAAGGTAAAAGAAGTTGAAAAGGTCAATTACGAAGATGGAAGCCCCCaacagaagaaaaaaattaaacagcaGACTGCTGCGGTAGAAAGCGATGTCGAGTCGGATCTGGACATTACTATAGTGAAGGAAGAAATACCAGatgaagatgaaaataaaaatgttagtgAAATTGCTCACTTGAACGCAGATTTGTTACCGTGGCCACAAAAATACATGGAAGAACTTTTAAAGAAAATAGAATCCAAACTTCCAAAGCTAGAAAATTTAACATACAAATCTCGAGTGGAGAAAATTGAGTGGAatgatAAAAGAGTAAGACGTTATCGTATTTTAAAAGAATTAGTAGACGATGCGAAGGAATGGGTTTTAAAACCGTGGACTAACTTTTACAGGGGACGAAAAATGAATCGACATCCAGATTTACCTAGGCGGCCTTTATCAacgtacattattttttatttgaaacaaaaagaCAAAGTATTGCTAGAACATCCAGGGATGGATATGATGGAACTTTCAAAACATATAGCTGCATTGTACAAGCAACTATCAGAATTTAGtcgATTGCATCCCGAATTAGTccgaacaaaattcaaaaaagacAAGCAAACTGCGAGGCAAACAGCTCCTACACGTCATTATAATAACGCCCCTTCAAAACCACTTAGCCCTTTTAAACTTTACTGTCAAGATATACTAAAACGAGTCGAACATGATGCAGACTTTGACAAAGCATCATGCATAGAAAGTTGTAAAGAACAGTGGCGTACAATGAGTGACAAAAACAAAGTGTTTTGGATAAATTGGTCATTAGATAAAGAAACCAAGTACCAAGAAGAACTGAAGAAATATGTAGCAGAGAATCCCGAGTATATACCGACGGGCTACAAGTCAGTAGTAACTAAAGGCGAAAGGGCTATAAAAGAAAGAATGGCTGGGAAGCCAGAAAAGCCACCAAACTCAGCATATAGCCTCTTTTCAAGACTTATGCTAGTCAGTGAAGATGTGAAGAAAAAGAAAGAATACACGGATCGTGTAAAACATATGTTGgaacaatataaattacaatacgcAGAATACCTAGAATCACTTCCTGAGGATGAAAGACAAATAGAAAGAAAAGGGAAAACACCTAAAACAAAACCTAATTCGACTGAAAAGGAATCTGATGAAAAAGAGGAagcgaaagagaaaaaaataagtaaatctGTTACTccaaagaaaaagagaaaaccCAAGCAAAAGCGGCCATTAAAGAACAACAACAATTTGTATGAAGGGGAACCCCCTCCTCCACCTACAACTCCATATTTGTTATTCCTCCAAACATACAAGAAGCACTATCCACATAAAAAGGATTCAGCAAAGCAGTGGTCCCTTCTGCCCGATGATGAAAAACATTTCCATCGGCAAATCCTAACCGATATGAAAAGAATTTATATAGAGGGTTACGAAAACTTCTTAAAGGGTTTAAGTCAAGAAGAGCTCAAAGAGTATTCGGAATGGAAGAAGCAAAACCagaatttgttaacaaattcaaaaaattcagATGACGAAAATAAATCGGACaaagatgatgatgatgatgatgatgataaaACTCCCGATTATCCGAAACCGGATTATCCGAACTCCGTTTTATCCGAAATAAATGCGAAATTTCAATTCTCCGGTTTATCCGAAACGCGGTTTAAAAAATCTCCCGATTATCCGAAGCGAACCGGACATTACCATAAGAAAGACCTGGGGAAACCGTCGCCGATGAAGACGATGAGAATTTGTATGAGATTGCAgcgaaaataa
Protein Sequence: MVSKRKSANKNEAGPSKKKVKEVEKVNYEDGSPQQKKKIKQQTAAVESDVESDLDITIVKEEIPDEDENKNVSEIAHLNADLLPWPQKYMEELLKKIESKLPKLENLTYKSRVEKIEWNDKRVRRYRILKELVDDAKEWVLKPWTNFYRGRKMNRHPDLPRRPLSTYIIFYLKQKDKVLLEHPGMDMMELSKHIAALYKQLSEFSRLHPELVRTKFKKDKQTARQTAPTRHYNNAPSKPLSPFKLYCQDILKRVEHDADFDKASCIESCKEQWRTMSDKNKVFWINWSLDKETKYQEELKKYVAENPEYIPTGYKSVVTKGERAIKERMAGKPEKPPNSAYSLFSRLMLVSEDVKKKKEYTDRVKHMLEQYKLQYAEYLESLPEDERQIERKGKTPKTKPNSTEKESDEKEEAKEKKISKSVTPKKKRKPKQKRPLKNNNNLYEGEPPPPPTTPYLLFLQTYKKHYPHKKDSAKQWSLLPDDEKHFHRQILTDMKRIYIEGYENFLKGLSQEELKEYSEWKKQNQNLLTNSKNSDDENKSDKDDDDDDDDKTPDYPKPDYPNSVLSEINAKFQFSGLSETRFKKSPDYPKRTGHYHKKDLGKPSPMKTMRICMRLQRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00768268;
90% Identity: iTF_00768279;
80% Identity: -