Hrub036876.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- tfip11
- Assembly
- GCA_963082715.1
- Location
- OY720454.1:63690334-63697704[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-94 5.1e-90 304.1 10.4 1 275 406 677 406 677 0.98 2 2 0.12 5.3e+03 -1.0 0.0 157 190 689 721 682 731 0.71
Sequence Information
- Coding Sequence
- atgtCTGACGAAGAAGTGGAAAAGTTTGAAATCACCGACTATGATTTGGACAACGAATTTAATATGTTTCGACCGCGTCGAAACCTAACCAAAAACCAACAAATTTACGGCATATGGGCTGATGATAGTGACAATGAAGACAGACAACAAAGTTCATCATCCCGAGGGGTTCGGAGATCTAAAGATTATACAGCTCCGATTGGGTTCGTCGCTGGTGGGGTTCAACAGGCAGGTAAAAAAGACAAAAAGAAAGAAAGTGATGGAGATTCCGATAAATCGGAAGATGAGGACGATAAAGcatataaaaaagaatttatgaaaaacaGTTCATCGGATTCAGACAGTGATGGTCCTTCAGTGAGGCCTAGTTTTCAAAAATCAACAAAAAGTACTGTAACAGAAATAAATGCAGATATAGCTggtttaagaaataaaaaagctttCAACCCTGCTCTTGCAAATAAGGGTGTGGGAAATTGGGAAAAGCATACAAAAGGAATTGGGGCTAAACTGTTATTACAAATGGGGTACCAACCTGGAAAAGGTTTGGGGAAAGATCTTCAAGGTATTTCCGCCCCAGTTGAAGCCCATATTCGTAAAGGCCGGGGCGCAATCGGTGCTTACGGCCCTGAAAAAGCTGCAAGTATCGCCgataaaaaccaaaaaataatcatcaTCGACGACGAAATAGACGATGAAAATAAATGGCGAAAAGACGCAAAGCACATCATAGACGGAAAACACATTAAAGACAAAAAGAAAATGCGTTATTATTACCGCAGTGTTGATGACGTCATCGAGAAAGGCAAACGGCCCGGCGCGTTGCGCAGTACATCAAATTTAAGCGAACTTAGCAAAGTAAAAGTTATAGACATGACCGGACCTCAACAACGAGTCCTCAGCGGATACCACGCCCTTAGTGGACCTAAAGCCCCACCTGGGGTTGAAAACTATGAAGATGTTGTCCACAAACAATGCGCAAATTTTGCATTACCAGAAATCCAACACAACTTAGATTTATTAGTCGATATGTGcgaagaagaaataattttgtgCGACAGAAACAGTCGACATTGTCAAGATAAAATAATTGCTTTGAATCAAGAAGAATTACAAttgaaaaacgttttaaaaaaagaagatgaatgtattgaaatattagaaaatgttTTAGAAACTGTTGAACAATTAATAGATCCGTCTCAAAATCTATCTTTGGGTCAAGTTGCGCAAGCTTTTCGCGATTTACAAGACAAATATTACGAGGAATATTCTTTGTATGAATTGGGCGAGCTTGCGCCGGGATTAGTCGGTCCGTTAGTAACTTCCGCGCTTGCAAGTTGGTCAGCATTAAATTCCCCTAAACAATTTACAGAAATATTTGCGCAATGGAAAGACATTTTAGATAAACCAATACAGCGCGGAATTTTAGAAtcaaataatagtaatattcaACCTTATGATAGTTTAGTTTGGAATACTTGGATTCCAGTTATTCGGGGGGTTATTTCAACTTGGAATGCGCGCGATTGTGACCCGttgattattttaatagaaacaTGGATGCCCTTGCTGCCATCTTGGATTTTAGAAAACGTAATAGATCAGTTGGTAATACCGCGATTAACAAACGAAATCGCAATATGGAATCCATTAACAGATACAACTCCTATTCATGTATGGACGCATCCATGGATACCATTATTAGGGGCAAGAATTCATGCCATAATATTTCCATTAATTCAAGAAAAATTAGGTCACGCTTTATCAAACTGGCATCCGTCAGACCGTTCCGCAAAACCGATGTTGAAACCGTGGCAACCAGCACTTCCGGAGGGAGTTTTCGCCGGTTTTCTCCATAAACATATCGTCCCTAAACTTCATCTTTGTATGCAGTCGTTTGTTATCAACCCCCATCAACAACATTTAGATGCGTGGAATTGGGTAATGGATTGGAATGATATGATAAATGTGGTTACCATGACGCATATACTAGATAAATGCTTTTTTCCAAGATGGTTACAAACTTTGGCGTTATGGTTGAACCATAATCCAGATTATGCACAAGTTACTGAATGGTATTCGGGGTGGAAAAGGATGTTGTCGGACCAGTTGTTGTTGCAACCCAGTATTAAGGaTCACTTCCACAAAGCTCTGGAAATGATGAACCGAGCTGTAAGTACCGGCCAACAACCAGGCGCTATGGAATCAGTTTCATATCTCACCCATACAGAAAACATGCCTTTACCGCCACCTCCTCCAAGAATAGACAGTATGAACGAAGCTCTTCGCACCGCATCCATGATCCCGACTGGTTTCAAAGACTTAATAGCAAAACGCTGTGAAGAAAAAGGAATTTTATTTGTTCCAATACCAAACAGATTTCATGAAGCGAAACAGGTTTACAAAATCGGGACGAATACACAGTGTTACATCGATAGGAATGTTGTGTTTGTAAATCAAGGATCAACTTGGCTTCCGACATCTTTGACAAGATTGATAGACATGGCgtcttaa
- Protein Sequence
- MSDEEVEKFEITDYDLDNEFNMFRPRRNLTKNQQIYGIWADDSDNEDRQQSSSSRGVRRSKDYTAPIGFVAGGVQQAGKKDKKKESDGDSDKSEDEDDKAYKKEFMKNSSSDSDSDGPSVRPSFQKSTKSTVTEINADIAGLRNKKAFNPALANKGVGNWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEAHIRKGRGAIGAYGPEKAASIADKNQKIIIIDDEIDDENKWRKDAKHIIDGKHIKDKKKMRYYYRSVDDVIEKGKRPGALRSTSNLSELSKVKVIDMTGPQQRVLSGYHALSGPKAPPGVENYEDVVHKQCANFALPEIQHNLDLLVDMCEEEIILCDRNSRHCQDKIIALNQEELQLKNVLKKEDECIEILENVLETVEQLIDPSQNLSLGQVAQAFRDLQDKYYEEYSLYELGELAPGLVGPLVTSALASWSALNSPKQFTEIFAQWKDILDKPIQRGILESNNSNIQPYDSLVWNTWIPVIRGVISTWNARDCDPLIILIETWMPLLPSWILENVIDQLVIPRLTNEIAIWNPLTDTTPIHVWTHPWIPLLGARIHAIIFPLIQEKLGHALSNWHPSDRSAKPMLKPWQPALPEGVFAGFLHKHIVPKLHLCMQSFVINPHQQHLDAWNWVMDWNDMINVVTMTHILDKCFFPRWLQTLALWLNHNPDYAQVTEWYSGWKRMLSDQLLLQPSIKDHFHKALEMMNRAVSTGQQPGAMESVSYLTHTENMPLPPPPPRIDSMNEALRTASMIPTGFKDLIAKRCEEKGILFVPIPNRFHEAKQVYKIGTNTQCYIDRNVVFVNQGSTWLPTSLTRLIDMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028749; iTF_01275278; iTF_00469649; iTF_01104372;
- 90% Identity
- iTF_00768295;
- 80% Identity
- -