Pnig001204.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- tfip11
- Assembly
- GCA_947425015.1
- Location
- OX380344.1:18204304-18207354[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-93 1.7e-88 298.4 11.1 1 275 404 675 404 675 0.98 2 2 0.08 2.1e+03 -0.4 0.0 157 190 687 719 680 729 0.76
Sequence Information
- Coding Sequence
- ATGTCAGAAGACGAAGTGGAAAAGTTTGAAATTACAGATTATGATTTAGATAATGAATTTAATATGTTTCGACCTCGTCGAAACCTATCAAAAAATCAACAGATTTATGGTATTTGGGCTGATGATAGTGACAATGAAGATAGGCAAGGTTCATCAAGAAGTGTTCGTAAACCTCCTCCTAAAGATTACTCTGCCCCAATTGGTTTTGTTGCTGGTGGTGTACAACAAGCTGGCAAAAAGAAAGAGAAGAAAGATGAAAGTGGAGAAGAATCAGATAAATCAGAAGATGAAGATGATAAAGCTTACAAGAAAGAATTCATGAAGAACAGTTCTTCAGATTCTGATAGTGATGGTCCATCAGTGCGTCCTAGTTTTAAGAAAAGTACACAATCAACAGTTACCGAAATCACAGGAGATATAGCTGGTTTAAGAAATAAGAAAGCTTTCAATCCTGCTCTTTCAAATAAAGGGGTTGGAAATTGGGAAAAACATACAAAAGGGATCGGTGCTAAATTATTACTACAAATGGGTTACAAACCTGGCAAAGGTTTAGGTAAAGATTTGCAAGGTATTTCAGCGCCGGTAGAAGCTCATATACGTAAAGGTAGAGGTGCAATTGGTGCCTATGGACCTGAAAAAGCTGCCAGCATTGCTGATACAAAAATTCCTGGTAAATCTGGTAAAAAAGATGATGAAGATGATGAAGGAGAAGACAAATGGAAAAAAGATGGAAAGTTCCCCAAAGATAAAAAGAAAATGCGTTATTATTACCGTAGTGTTGATGATGTTATCGAAAAAGGGAAAAGACCTGGAGCGCTCAGAATTCCGTCAAATATGAGCGATTTAAGTAAAGTTAAAGTTATTGATATGACAGGTCCCCAACAACGAGTTCTGAGTGGTTACCATGCACTCAGTGGACCTAAAGCACCACCGGGAGTTGAAAACTTTGAAGATGTTGTTCACAAACAATGTGCTAACTTTGCTCTACCGGAAATCCAACACAATTTAGATCTGTTAGTTGATATGTGTGAAGAAGAAATTATTTTATGTGACAGAAATAGTCGCCATTGTCAAGACCGTATTATTGCTTTAAATCAAGAAGAATCACAACTTAAAAGTGTTTTAAAAAAGGAAAATGAATACATGGATATTTTAGAAAGTGTTCTCGATACAGTTAATAAACTAATGGATCCTTCTCAAGGATTGTCATTAGGTCAAGTTGCTCAAGCATTCAGAGATTTACAAGAACAACATTTTGAAGAATATTCTTTGTATGAATTAGGAGAACTAGCACCAGGTTTAGTTGGTCCATTAGTAACTTCAGCTTTAGCAAGCTGGTCACCACTAAATTCTCCTAAACAATACACAGACATATTTAAGCAATGGAAGGATATTTTAGATAAACCGAAACATCGTGGAGTGTTAGAGTCTAATAATACTGGAATTCAACCATACGACAGTTTACTTTGGAACACCTGGGTGCCTGTCATTCGCGGTGTTATAGCAACTTGGAACGCACGTGATTGTGATCCATTAATAACTCTACTAGAAACATGGATGCCTCTTTTACCTCCTTGGATAATGGATAATATAATAGATCAGTTAGTTGTTTCCCGATTAACAGCTGAAATTACAATTTGGAATCCGTTAACTGATACAACTCCAATTCATATTTGGATTCATCCTTGGATCCCACTATTAGTTTCAAGAATACACACAACAATTTTCCCTTTAATTCAAGAAAAATTAGGAGCAGCTTTAGCCAACTGGCATCCTTCGGACAGTTCTGCAAAACCGATGTTAAAACCATGGCAAGCTGCTCTACCCGAAGGAGTTTTTGCAGGATTTCTGCATAAACATATAGTTCCTAAACTTCATATTTGTATGCAGTCACTTGTAATCAATCCTCATCAACAACATTTAGATTCCTGGAATTGGGTGATGGATTGGATTGATTTAATAAGTGTTTTAACAATGACGCACATATTAGATAAATGTTTCTTTCCTCGTTGGTTACAAACTTTAGCGTTATGGTTAAATCATAATCCCGATTATGCACAAGTGACCGAATGGTATTCGGGCTGGAAACGAATGCTATCTGAACAATTATTACTGCAACCCAGTATTAAAGATCACTTCCATAAAGCTTTGGAAATGATGAACCGAGCAGTAAGTTCAGGTCAACAACCTGGTGCAATGGAATCAGTTTCTTATCTCACAAATATAGAAAATCTACCACCACCACCTCCTCCTCCAAGAATAGATAGCATGAACGAAGCTCTCCGAACCGCTTCCATGATTCCATCAGGTTTCAAAGACTTGATTGCGAAACGATGTGAAGAAAGAGGAATGTTATTCGTACCAATTCCACACAGATTCCACGAGGCTAAACAAGTTTATAAAATCGGAACAAATACTCAATGTTACATTGACAGAAATGTTGTCTTTGTAAATCAAGGATCAACGTGGTTACCAACATCGTTGTCTAAATTAATAGACATTGCTTCATAA
- Protein Sequence
- MSEDEVEKFEITDYDLDNEFNMFRPRRNLSKNQQIYGIWADDSDNEDRQGSSRSVRKPPPKDYSAPIGFVAGGVQQAGKKKEKKDESGEESDKSEDEDDKAYKKEFMKNSSSDSDSDGPSVRPSFKKSTQSTVTEITGDIAGLRNKKAFNPALSNKGVGNWEKHTKGIGAKLLLQMGYKPGKGLGKDLQGISAPVEAHIRKGRGAIGAYGPEKAASIADTKIPGKSGKKDDEDDEGEDKWKKDGKFPKDKKKMRYYYRSVDDVIEKGKRPGALRIPSNMSDLSKVKVIDMTGPQQRVLSGYHALSGPKAPPGVENFEDVVHKQCANFALPEIQHNLDLLVDMCEEEIILCDRNSRHCQDRIIALNQEESQLKSVLKKENEYMDILESVLDTVNKLMDPSQGLSLGQVAQAFRDLQEQHFEEYSLYELGELAPGLVGPLVTSALASWSPLNSPKQYTDIFKQWKDILDKPKHRGVLESNNTGIQPYDSLLWNTWVPVIRGVIATWNARDCDPLITLLETWMPLLPPWIMDNIIDQLVVSRLTAEITIWNPLTDTTPIHIWIHPWIPLLVSRIHTTIFPLIQEKLGAALANWHPSDSSAKPMLKPWQAALPEGVFAGFLHKHIVPKLHICMQSLVINPHQQHLDSWNWVMDWIDLISVLTMTHILDKCFFPRWLQTLALWLNHNPDYAQVTEWYSGWKRMLSEQLLLQPSIKDHFHKALEMMNRAVSSGQQPGAMESVSYLTNIENLPPPPPPPRIDSMNEALRTASMIPSGFKDLIAKRCEERGMLFVPIPHRFHEAKQVYKIGTNTQCYIDRNVVFVNQGSTWLPTSLSKLIDIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766542;
- 90% Identity
- -
- 80% Identity
- -