Hrub007601.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- -
- Assembly
- GCA_028454235.1
- Location
- CM052175.1:12113286-12120331[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-14 9.9e-11 41.1 0.2 10 69 254 311 248 316 0.85
Sequence Information
- Coding Sequence
- ATGGACGGGGCCAACGTGAATGGCGGGAACGGCGACGAGGCGCGCGAGACTCCTAACCTAGAAATCGCTGAAATGCCGGAGTTACAAGAGACGCAAATTAAAATGGATATATCTCCTAAGATGGAATGTCAAGAAGTGAACGGTGACTTTAAACCTTCGCCGAAGAAGAGTCCGACGCCAATCGTTAAAAGAAAATTACGGAAATTTAAAGCCAATTCGACTAGTACTATAGAAAGTGATACAAGTACAAAAGGACGCAAACGGAAGTTTTCGGAAACCGATGTTAGCTCCGAGGAGTCTACGGAATTCAACGGATTCGATACCCAGGGAGATAATGAAATGGAACCAGGAAGTCACATTCTGAGAAAACTGATTGCTGAAGCTGAGATGGCGGAAGCTCAATTGGCAAAACGGTTTATGTATAGTACAAGGAAAAAGTTTAGTGGAAGATACGATGAAGATTCAGATGACAATAGGATGCCTAGTTATGATTCGTTACATTTAGATATAGATAAAATAAAAAAGGAAAAAGAATCTGATAAATCTGAAACAGATTCAATTGGTTTACCAAATACTGTGGAGTCTGAAACAGATACACGAAGAACAGAAGATACATCGACTAAGTCAACAAATTCATCTGCTGCTAGTAGTCCAGCTAGAACTCCACGATCGAAAGGTCGTGTGGCTCGTGCAGTCAGTCCAGGAAGTATAACAAAACAAAAAATGATTGTTGATATATCGAACCCTGCATTCAAGGAACCTTTTAAATATGGTTGGAAACGAGAGTTAGTGTTTAGAGCAAGTACCGATATAAATCACAAAAAAATGGCTGATATATATTATTATACACCAAAGGGAAAGAAAGTGAGAAGTTTTAGAGAAGTTGCAGAATTTCTTAATACAAAAGAGTTAACTGTTGATAATTTTACGTTCTTCAAAGAACCAATTGGTATTGAAGATCCTACTAAGGAAATTATTCGGGATGCGAAAAGAATGAGAGGATCTATGGGAACAACTCCACCCAGGAAAAGCTTTCCGCATAAGAAAAATGCACCTGGCAGAAGAGCTGCAGAACCACCGCCTACTACTTCTGTATCTGTGCCTACAAAATCTGCTAAATCACCAAAAACTCCATTTACTGGATTTAAAGTCAAAGTGCCTGGAAAGAGAACTCCTCAAATAACAGAAATAAAATTATCTGAAGAAAGTGAGATGCTTCCACCTCAAAGAACCACAAGCACAAGAAGGAGTCAGCCGATAGTAGAAAAACCTCTACCTCCAAAGCCTAAAAGACAACTAACGCCCAAAGTTCAAGAACCATGCAGTATAAGATGCTCAACGAGTATGGGATTGATACCAAGCTTACAATGTAGCGTGTGTCTCTGTTTATATCATCCTGAATGTGTTGATGGTTTGGAATTTGCGGGAAGTGACGATTACGTTTGCAAGAACTGTCAGCAGGATACTAATGAATCTCAACAATCTCAAACAAATGCGTCTATGACACCTCCACCATTAATACCAATTAGTATGCTAGGCACACAAGGTGCAAAAACAAAGTATCAAGCAAACTCAACGCCTCCAAAATTACAAAGAATTCCAAAATCTGATAGTACAGATTCACAGTCTCGAAATGCTACTAAAGTTTCGAAAGCGCATCCATTGGCATCGTATTCCCCATCGAATTCCGAGAAAAAAGAGAGCAGTTGGTATTCTCAGGCAGAAAATGAATTTTTGCAAAGTCACGATGGAACTGTACCGAAACCAGCTCAAAATATCGCATTGATGGGTGGCAAAAAGTACATTGTTGTGCCAAAAAATAACGCTATGGCTGTCCAGCCAGCTATAACAGTGAAACCTGATAAAATTGGTGATAAGCCTCCGATACTTCAGGATGGCAAGGATGTCGATAAATCAAGTGACAGAAATATGTCGAAAGATATTACACTTACAGAAATTACTGCATCTCTTGCGGAGGAACAGAGAGAAGAAACGTGCAATAACAGCAATCAAATAGATACATCATCTGTTAATAGATCGGAAAAGGATAGATCCAATGCAAAAACAGAACTTACAGAACCAGCCGAGAAATTAGTTGCACGTAGCAAATCACTTGAGAGGACGACGTTAGTAAATAATTCAAACACAGCTAGTACAAATAACGATAAAGTCGATTCACGACAGTCAATCACAAGTAGTTTGGGTACTATTAAAATAAGTAGCAAaatgaagcaaactcaacaggaaacagaacaagaagaagaagaagaagaagaacatcagcaacaacaacaacaccaccaccaacaacatcatcaacaacatcaccaacaaccacaaAATTTTATGGATTCAGTCTGTGCTGGATATCATGCCTTGCTACGTATATTCCAATACCTTAAAGTTCAAGAATTGCTTCGAGCGGCTAGAGTGTGCAACATGTGGAGGGACTTGGCCGCACATCCTTCTTTGTGGAAAACTGTGAGAATGAAAAATAGTCAGGTTACAGACTGGGATGGTTTAGCGGATACGTTACAAAGGCGTGGTACTCAGCACTTAGATCTCCGAAAAATGCTTGTGGCGGGTGAATGCGATGACATTTGGAAAAAGTTCTTGTTAGTCATACCACGTGTCACTAGTCTTGTCAAGCTAGAGTTGTGCAGATGCCCTGTAATGGTAGTGGAAGAAGTTATAAGCAGTTGTCCTCAGCTAGAGGTATTGAGTGCAATGTCAATAAAATGCGATACCTTGAACTTGGAATCGGTTGGAAACCTGAAACGCTGTCAAGAATTGAGGCTGAAAGCAATAAGTGGAATGTCTCTGCAAGTAGATCTCACGCCTTTACAAGAATTAACGCATTTATCGCAACTTAGTTTAACATCTGTTAAGGAACTTGGGAAGAAGAGAATCGACGTTATACAAAATTTAGCAAATTTGGAGACATTGGAATTAGGAGAATGTTCCGATTTTCCAGACAAATTTGGTACTACCGTTTTGATAAAATTGCAGAAATTAGAGCGCCTGAGGCTCGAAAAAGGTCAAGGCTCGTGTTGCACATTTGACATTTTGGAGGGTTTGTCGAAACTGCAAAATTTAATGCAATTGGAGTTGGTCAACTTCGATGTGAAAAATGGCTTCGACAAATATCTTGCAAATTGTAAAAATATTAAGAGGCTGTTAATTATACCAACTTACATATCGCAGTCAGCAACGTCTAACAACATGGTGCTTGGCGGTGTTACTGAATTGTCGAGTAATTTAACACACTTCGTTTGGGGTGTTACACTTGAGTTACTTAGGGTTACAGAATTATTTGTCGATCAATGTAATTTAATGAATAATCAAGTCACTGGTGATTCGATACCAATTCTCAAGCCAGTACCTTGTTTAAAATTAATCAAAGATGTTGAAGATGAAAATGACAATCAAAAAGATGATGATAAACAACCAAACTTAACAAATCCTCAAGTGGATATATTACCGTTGCCTCAACTTCAAAAACTGTTACTAACTGCATTGCCCAGAACACGTGTTAAAATCTTAAAAATTCCTTTCCATGCGACGTGGCGGCAAAGCATTTCAGATACTGCTACACAATAG
- Protein Sequence
- MDGANVNGGNGDEARETPNLEIAEMPELQETQIKMDISPKMECQEVNGDFKPSPKKSPTPIVKRKLRKFKANSTSTIESDTSTKGRKRKFSETDVSSEESTEFNGFDTQGDNEMEPGSHILRKLIAEAEMAEAQLAKRFMYSTRKKFSGRYDEDSDDNRMPSYDSLHLDIDKIKKEKESDKSETDSIGLPNTVESETDTRRTEDTSTKSTNSSAASSPARTPRSKGRVARAVSPGSITKQKMIVDISNPAFKEPFKYGWKRELVFRASTDINHKKMADIYYYTPKGKKVRSFREVAEFLNTKELTVDNFTFFKEPIGIEDPTKEIIRDAKRMRGSMGTTPPRKSFPHKKNAPGRRAAEPPPTTSVSVPTKSAKSPKTPFTGFKVKVPGKRTPQITEIKLSEESEMLPPQRTTSTRRSQPIVEKPLPPKPKRQLTPKVQEPCSIRCSTSMGLIPSLQCSVCLCLYHPECVDGLEFAGSDDYVCKNCQQDTNESQQSQTNASMTPPPLIPISMLGTQGAKTKYQANSTPPKLQRIPKSDSTDSQSRNATKVSKAHPLASYSPSNSEKKESSWYSQAENEFLQSHDGTVPKPAQNIALMGGKKYIVVPKNNAMAVQPAITVKPDKIGDKPPILQDGKDVDKSSDRNMSKDITLTEITASLAEEQREETCNNSNQIDTSSVNRSEKDRSNAKTELTEPAEKLVARSKSLERTTLVNNSNTASTNNDKVDSRQSITSSLGTIKISSKMKQTQQETEQEEEEEEEHQQQQQHHHQQHHQQHHQQPQNFMDSVCAGYHALLRIFQYLKVQELLRAARVCNMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLVAGECDDIWKKFLLVIPRVTSLVKLELCRCPVMVVEEVISSCPQLEVLSAMSIKCDTLNLESVGNLKRCQELRLKAISGMSLQVDLTPLQELTHLSQLSLTSVKELGKKRIDVIQNLANLETLELGECSDFPDKFGTTVLIKLQKLERLRLEKGQGSCCTFDILEGLSKLQNLMQLELVNFDVKNGFDKYLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSSNLTHFVWGVTLELLRVTELFVDQCNLMNNQVTGDSIPILKPVPCLKLIKDVEDENDNQKDDDKQPNLTNPQVDILPLPQLQKLLLTALPRTRVKILKIPFHATWRQSISDTATQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866703;
- 90% Identity
- iTF_00762552; iTF_00865320; iTF_00863954; iTF_00864638; iTF_00862564; iTF_00861141; iTF_00863271; iTF_00866009; iTF_00866703; iTF_00860392; iTF_00861876;
- 80% Identity
- -