Hlab002839.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- -
- Assembly
- GCA_001263275.1
- Location
- NW:587428-593407[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-15 1.2e-11 43.2 0.3 10 70 97 155 93 159 0.88 2 2 0.2 3.9e+02 -0.1 0.0 29 43 558 572 540 577 0.84
Sequence Information
- Coding Sequence
- ATGCATAGTTATGATACAGAACATATATTAGATTtagataaaataaagaaagagaaagaatcgGATAAATCTGAAACAGATTCAGTTGGAATACCAAATAGTATGGAGTCAGAATTAGAAGTACAAAAAAcaggtgaaatttcaattaagtCAACAAACTCATCATCAGCCAGTAGTCCAGCAACATCTTTAAAATCTAAAGGTACACGTATAACACGCGGAGTCAGTCCAGGTAGTGTTGGAAAACCAAAAATGGCTGTTGATATGTCATGTCCAGCATTCAAAGAACCGTTCAAGTATGGTTGGAAACGAGAATTGGTATTTAGAGCAAGTAGCGATTCTAGTCTCAAAAGAATGGCCGATATCTATTATTATACACCAAAGGGAAAGAAAGTTAGAAGTTTTAGAGAAGTTGCAGAATTTCTTAATACAAAAGAGTTAACTATTGATAACTTTACATTCTTCAAAGAACCAATTGGTATTGATGATCCTGAAAAGGAGATTATTCGAGATGCAAAAAGAATAAGGGGACCTGGAATAGCTACAACTCCACTAAGGAGAGGTGTAGGATATAAGAAAGGCACACCTGGGAGAAGAGCAATAGAAGAACCTGTATCATTGCCTACAAAAGCAGCTGCTAAATCACCAAAAGCTGCATCAACAGGGTTTAAAGTGAAAGTGCCTGCAAAGAAAACCCCCCAAATAAaaataaAGTCACCCCCTCAAGAAAGTGAAATGCTTCCACCTCAACGGACTACGAGTACAAGGCGAAGTCAACTACCTGTAGAAAAACCACTGCCCCCCAAACCCAAAAGGCAATTAACGCCGAAAGTTCAAGAACCATGCAGCATAAGATGTTCTACAAGTATGGGGTTGATACCAAGCTTACAATGTCGCGTCTGTCTCTGTTTATATCATCCTGAATGTGTTGATGGTATGGAATTTGCAGGAAGTGATGATTATGTTTGCAAGAACTGTCAGCAAGATACTAATGAATCTCATCAATCTCAAACAAATCCATCTTTGACACCTCCTCCATTGATACCAATTAGTATGTTAGGTGCACAAAGTGCAAAATCAAAACATCAAGTAAATCTAAATCCACCAAAACTTCAAAGAATTCCAAAATCTGATAATACAGATTTACAGTCTCAAAATACTACTAAAGTTTCAAAAACATCCTCTGCAACATCACATTCCCCTTTAAATTCGGATAAAAAAGACAGCAGTTGGTTTGCTCAaacagaaaatgaatttttacaaagtCATGATGGAGTTTTACCAAAACCAGCCCAGAATATTGCTTTGATGGGAGGCAAAAGATACATTGTTGTGCCAAAAAATAATGCTATGGCTGTTCAACCAGCTATAACAGTGAAATCTGTTAAAATTGGCGATAAAGCTCCTATACTTCAGAATAATTCACTTACAGATACATCAAACACTGTTGAAAATTCTATATCTATAAAATCACGCACTCCATTAACAACAAAGTTTTTGGGGAAAGATGCTCTTGATAAGTTAACTGACAAAGATATGTCGAGAGATGTATCACAAACAGAATGTACACCATGTGCTGTGATGGAGGAAACTGAAGAAACATGTAATAGTAGcgataaaacaaataaattacagaaTGATTTGTTCAATACGCGAGACCTTGCAGTAGAAACCAAAAAATCAGTGAGTTATATGTCACCCGAAAGGAAGactataataaataattcaaacacaACTAGTACAAACAATGATTTACTTAAAGTAGACACACAGCAATTTGTGACAAGTAGTTTGGGTACAGTTCAAATAAGTAGCAAaagaaaacaaaatcaaCAGGAAACGGAACAACAACAACATTTTATGGATTCAGTTTGTGCTGGTTATCATGCATTACTGCGCATTTTCCAATATCTTAAGGTTCAAGAATTACTCCGTGCTGCAAGAGTATGTAAAATGTGGCGAGACTTGGCGGCACATCCATCACTGTGGAAAACTgtacgaatgaaaaatagtcAAGTAACAGACTGGGATGGTTTAGCAGATACATTACAGAGGCGTGGTACTCAACATTTAGATCTCCGAAAAATGCTTGTAGCAGGAGAATCCGATAGCATTTGGAAAAAGTTTTTACTAGTAATACCACGTGTAATTAGCCTcgttaaattagaattatgTAAATGCCCTGTGATGGTTGTTGAAGAAGTTATTAAGAGTTGTCCTCAGTTGGAAGTATTGAGTGCAATGTCAATAAAATGTGATTCCTTAAATTTGGAGTCTGTTGGAAATCTCAAGCGTTGTCAAGAATTAAGGCTTAAAGCAATAAGTGGAATGTCTCTACAAGAAGATCTCACACCTTTACAAGAACTAACACAGTTAACACAGTTGAGTTTAACGTCAGTTAAGGAACTTGGGAAGAAGAGGATCGATATTATACAAGCTTTAGTGAATTTGGAAGCATTAGAATTGGGTGAATGTTCAGATTTTCCAGACAAATTTGGTACTACAGTTCtgataaaattacaaaaattggaaCGCCTCAGACTTGAAAAAGGGCAAGGGTTGTGTTGTACTTTTGACATTTTGGATGGTGTAtccaaattacaaaatttgagTCAAATGGAATTGGTCAACTTCGACGTGAAAAATGGCTTTGATAAATGTCTtgcaaattgtaaaaatattaaaaggcTATTAATTATACCAACTTACATATCTCAGTCGGCAACGTCTAATAATATGGTGCTTGGAGGAGTTACCGAATTATCAAATAATTTGACACATTTTGTATGGGGTGTTACACTTGAGTTACTTAGAGTTACAGAATTATTTGTTGATCAATGTAATCTAATGCGTAAACAAGTCACTGGCGACTCGATACCAGTTTTAAAACCGGTACcctgtttaaaattaatagaagATGTTGAGGATGAAAATGACAATCAAAAAGGCGATGATAAACAACCAAATTTAACAAATCCTCAGGTGGATATATTACCATTGCCGCAACTTCAAAAACTTTTATTAACTGCATTGCCTAAAACAAGGGTTAAAATCTTGAAGATTCCTTTTCATGCTACGTGGCGGCAAAGCATTTCAGACACTGCTACACAATag
- Protein Sequence
- MHSYDTEHILDLDKIKKEKESDKSETDSVGIPNSMESELEVQKTGEISIKSTNSSSASSPATSLKSKGTRITRGVSPGSVGKPKMAVDMSCPAFKEPFKYGWKRELVFRASSDSSLKRMADIYYYTPKGKKVRSFREVAEFLNTKELTIDNFTFFKEPIGIDDPEKEIIRDAKRIRGPGIATTPLRRGVGYKKGTPGRRAIEEPVSLPTKAAAKSPKAASTGFKVKVPAKKTPQIKIKSPPQESEMLPPQRTTSTRRSQLPVEKPLPPKPKRQLTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGSDDYVCKNCQQDTNESHQSQTNPSLTPPPLIPISMLGAQSAKSKHQVNLNPPKLQRIPKSDNTDLQSQNTTKVSKTSSATSHSPLNSDKKDSSWFAQTENEFLQSHDGVLPKPAQNIALMGGKRYIVVPKNNAMAVQPAITVKSVKIGDKAPILQNNSLTDTSNTVENSISIKSRTPLTTKFLGKDALDKLTDKDMSRDVSQTECTPCAVMEETEETCNSSDKTNKLQNDLFNTRDLAVETKKSVSYMSPERKTIINNSNTTSTNNDLLKVDTQQFVTSSLGTVQISSKRKQNQQETEQQQHFMDSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLVAGESDSIWKKFLLVIPRVISLVKLELCKCPVMVVEEVIKSCPQLEVLSAMSIKCDSLNLESVGNLKRCQELRLKAISGMSLQEDLTPLQELTQLTQLSLTSVKELGKKRIDIIQALVNLEALELGECSDFPDKFGTTVLIKLQKLERLRLEKGQGLCCTFDILDGVSKLQNLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFVWGVTLELLRVTELFVDQCNLMRKQVTGDSIPVLKPVPCLKLIEDVEDENDNQKGDDKQPNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTATQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01065571;
- 90% Identity
- iTF_00118010;
- 80% Identity
- -