Aplu108523.2
Basic Information
- Insect
- Anthophora plumipes
- Gene Symbol
- -
- Assembly
- GCA_951804975.1
- Location
- OX638121.1:12103807-12110647[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-15 1.6e-10 43.1 0.3 10 70 260 318 254 322 0.88 2 2 0.35 7.1e+03 -0.6 0.0 29 43 721 735 703 737 0.85
Sequence Information
- Coding Sequence
- ATGGATCGTGCCAGTCTTAATGGCGGGAATGCCGATAGGGCACGCGAGAATCCTAACCTAGAAACTGGTAGTATGCCGGATCTACAGGAGACCCAAGATAAAGTGGAAACAGCCACTAAAATGGATGGTCAGGAGGTGAACGGCGACATGAAGGGTTCATCAAAAAAGGGTATGGCACCAAATGCTAGAAGAAAGCTATGTAAGTTCAAGGTTAATTCAACTAGTACCATTGAAAGTGAtacaatattaaatacaaaaggACGCAAACGGAAGCTACCGGAACCCGATGATCTTAGCTCAGAGGAATCGATGGAGTTCAATGGCTTTGATGTACAAGGAGACAATGAAATGGAACCAGGAAGTCATGTTTTGAAGAAACTAATTGCTGAAGCTGAAGTAGCAGAAGCTCAATTGGCAAAACGCTTTAGATATagtataagaaaaaattatgatTTTGAAAAGGAAGATGAAGATTCGGATGACAATAGAATGCATAGCTATGATACAGAACATATATTAGATGTAGataagataaagagagagaaagaatcggATAAATCTGAAACAGATTCAGTTGGAATACCAAATAGTGTGGAGTCAGAATTAGAAGTACAAAAGAcagatgaaatttcaattaagtCAACAAACTCATCAGCTGCCAGTAGTCCAGCGGCATCTTTAAAATCTAAAAGTACACGTACGTCACGTGGAGTCAGTCCAGGTAGTGTTGGAAAACCAAAAATGACTGTTGATATGTCAAGTCCAGCATACAAAGAACCTTTTAAGTATGGTTGGAAACGAGAATTGGTATTTAGAGCAAGTAGCGATTCTAGTCTCAAAAGAATGGCTGACATCTATTATTATACACCAAAGGGCAAGAAAGTTCGAAGTTTCAGAGAAGTTGCAGAATTTCttAATACAAAAGAGTTAACTATTGATAACTTTACATTCTTCAAAGAACCAATTGGTATTGATGATCCTGAAAAGGAGATTATTCGGGACGCAAAAAGAATAAGGGGACCTGGAATAGCTGCAACTCCACCAAGGAGAGGTGTAGGATATAAGAAAGGTGCACCTGGGAGAAGAGCAATTGAAGAACCTGTATCATTGCCTACAAAAGCAGCTGTTAAATCACCAAAAGCTGCATCAACAGGATTTAAAGTGAAAGTGCCTGCAAAGAAAACCCCCCAAATAACAGAAATAAAGTCACCCTCTCAAGAAAGTGACATGCTTCCACCTCAGCGGACTACAAGTACAAGGAGAAGCCAGCAACCTGTAGAAAAACCAGTGCCGCTAAAATCCAAAAGGCAATTAACGCCTAAAGTTCAAGAACCATGCAGCATAAGATGTTCTACAAGTATGGGGTTGATACCAAGCTTACAGTGTCGCGTCTGTCTCTGCTTATATCACCCTGAATGTGTTGATGGTATGGAATTTGCAGGAAGTGATGATTATGTTTGCAAGAACTGTCAGCAAGATACTAACGAATCTCATCAATCTCAAACGAATCCATCTTTGACACCTCCTCCATTGATACCAATTAGTATGTTAGGTTCACAAAGTGCAAAATCAAAACATCAAGTAAATCTAAATCCACCGAAACTTCAAAGAATTCCAAAATCTGATAATGTAGATTTACAGTCTCAAAATACTACTAAAGTTGCAAAAACATCTTCTGCAACATCACATTCCCCTTTAAATGcggataaaaaagaaagcagtTGGTTTGCTCaaacagaaaatgaatttttacaaagtcaCGACGGAGTTTTACCAAAACCAGCTCAGAATATTGCATTGATGGGAGGCAAAAGATACATTGTTGTGCCAAAAAATAATGCTATGGCTGTTCAACCAGCTATAACAGTGAAATCTGTTAAAATTGGTGATAAAGCTCCTATACTTCAGAATAATTCACTTACAGATACATCAAATACTGttgaaaattctatttctaTAAAATCGCGCACTTCGTTAACAACAAGGTTTTTTGGGAAAGATACTGATAAGTTATCTGACAAAGATGTGTCAAGAGATGTAGTACAAGCAGAATGTACACCGTATTCTGTGATGGAGGAAACTGAAGAAACATGTAACAGTagtgataaaacaaataaattacaaaatgatTTGTCCAGTATACGAGACCTTGCAGTAGAAACCAAAAAGTCAGTGAGTTATATGTCACCCGAAAGGAAgactataataaataatttgaacacAACTAGTACAAACAATGATTTACTTAAAGTAGATACACAACAATCTGTGACAAGTAGTTTGGGTACAGTTCAAATAAGTAGCAAaagaaaacaaaatcaaCAGGAACCGGAACAACCGCAACATTTTATGGATTCAGTCTGTGCTGGTTATCATGCACTACTGCGTATTTTCCAATACCTTAAAGTTCAAGAATTACTCCGTGCTGCAAGAGTGTGTAAAATGTGGCGAGACTTGGCGGCACATCCATCATTGTGGAAAACTGTACGAATGAAAAATAGTCAAGTAACAGACTGGAATGGTTTAGCAGATACATTACAAAGGCGTGGTACTCAACATTTAGATCTCCGAAAAATGCTTGTAGCAGGCGAATCTGATAGCATTTGGAAAAAGTTTTTACTAGTAATACCACGTGTAATTAGTCTCGTTAAATTAGAATTATGTAAATGCCCTGTGCTGGTTGTTGAAGAAGTTATTAAGAACTGTCCTCAGTTGGAAGTATTGAGTGCAATGTCAATAAAATGTGATTCCTTAAATTTGGAATCCATTGGAAATCTTAAGCGTTGTCAAGAATTAAGGCTTAAAGCAATAAGTGGAATGTCTCTCCAAGAAGATCTCACACCTTTACAAGAACTAACACAGTTAACACAATTGAGTTTAACATCAGTTAAGGAACTTGGGAAGAAGAGGATTGATATTATACAAGCTTTGGTGAATTTGGAAGCATTAGAATTGGGCGAATGTTCAGATTTTCCAGACAAATTTGGTACTACAGTTctgataaaattacaaaaattggaACGTCTCAGACTTGAAAAAGGTCAAGGTTCGTGTTGTACATTTGACATTTTGGATGGTGTATCCAAATTAAGAAATTTGAGTCAAATGGAATTGGTCAATTTTGATGTGAAGAATGGCTTTGATAAATGTCTtgcaaattgtaaaaatattaaaaggctGTTAATTATACCAACTTACATATCTCAGTCGGCAACGTCTAATAATATGGTGCTTGGAGGTGTTACCGAATTATCAAATAATTTGACACATTTTGTATGGGGTGTTACACTTGAGTTACTCAGAGTTACAGAATTATTTGTTGATCAATGTAATCTAATGAGTAAACAAGTTACTGGCGACTCGATACCAGTTTTAAAACCGGTAccctatttaaaattaattgaagatGTTGAGGATGAAAATGACAATCAAAAAGGTGATGATAAACAACAACCAAATTTAACAAATCCCCAAGTGGATATATTACCATTGCCTCAACTTCAAAAACTTTTATTAACTGCATTGCCTAAAACAAGGGTTAAAATTTTGAAGATTCCTTTTCATGCTACGTGGCGGCAGAGCATTTCAGACACTGCTACACAATag
- Protein Sequence
- MDRASLNGGNADRARENPNLETGSMPDLQETQDKVETATKMDGQEVNGDMKGSSKKGMAPNARRKLCKFKVNSTSTIESDTILNTKGRKRKLPEPDDLSSEESMEFNGFDVQGDNEMEPGSHVLKKLIAEAEVAEAQLAKRFRYSIRKNYDFEKEDEDSDDNRMHSYDTEHILDVDKIKREKESDKSETDSVGIPNSVESELEVQKTDEISIKSTNSSAASSPAASLKSKSTRTSRGVSPGSVGKPKMTVDMSSPAYKEPFKYGWKRELVFRASSDSSLKRMADIYYYTPKGKKVRSFREVAEFLNTKELTIDNFTFFKEPIGIDDPEKEIIRDAKRIRGPGIAATPPRRGVGYKKGAPGRRAIEEPVSLPTKAAVKSPKAASTGFKVKVPAKKTPQITEIKSPSQESDMLPPQRTTSTRRSQQPVEKPVPLKSKRQLTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGSDDYVCKNCQQDTNESHQSQTNPSLTPPPLIPISMLGSQSAKSKHQVNLNPPKLQRIPKSDNVDLQSQNTTKVAKTSSATSHSPLNADKKESSWFAQTENEFLQSHDGVLPKPAQNIALMGGKRYIVVPKNNAMAVQPAITVKSVKIGDKAPILQNNSLTDTSNTVENSISIKSRTSLTTRFFGKDTDKLSDKDVSRDVVQAECTPYSVMEETEETCNSSDKTNKLQNDLSSIRDLAVETKKSVSYMSPERKTIINNLNTTSTNNDLLKVDTQQSVTSSLGTVQISSKRKQNQQEPEQPQHFMDSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWNGLADTLQRRGTQHLDLRKMLVAGESDSIWKKFLLVIPRVISLVKLELCKCPVLVVEEVIKNCPQLEVLSAMSIKCDSLNLESIGNLKRCQELRLKAISGMSLQEDLTPLQELTQLTQLSLTSVKELGKKRIDIIQALVNLEALELGECSDFPDKFGTTVLIKLQKLERLRLEKGQGSCCTFDILDGVSKLRNLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFVWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPYLKLIEDVEDENDNQKGDDKQQPNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTATQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01065571;
- 90% Identity
- iTF_00760981;
- 80% Identity
- -