Gbre014056.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- -
- Assembly
- GCA_000671755.1
- Location
- Scaffold202:8615-15580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00051 0.031 14.4 1.1 1 23 273 296 273 296 0.95 2 23 0.00022 0.013 15.6 4.0 1 23 302 325 302 325 0.98 3 23 0.00063 0.038 14.1 0.3 2 23 367 388 366 388 0.97 4 23 0.01 0.62 10.4 3.3 1 23 468 491 468 492 0.96 5 23 0.00018 0.011 15.9 2.5 2 23 568 589 567 589 0.97 6 23 0.00075 0.046 13.9 0.6 1 20 600 619 600 622 0.94 7 23 0.00018 0.011 15.9 2.9 1 23 699 722 699 722 0.98 8 23 1.4 84 3.6 0.2 2 23 763 785 762 785 0.94 9 23 0.0025 0.15 12.3 0.2 2 23 799 820 798 820 0.94 10 23 1e-06 6.3e-05 22.9 3.6 1 23 827 849 827 849 0.98 11 23 0.61 37 4.7 3.5 1 23 990 1014 990 1014 0.95 12 23 0.91 56 4.2 3.2 1 23 1051 1074 1051 1074 0.94 13 23 0.00026 0.016 15.4 3.9 1 23 1088 1110 1088 1110 0.97 14 23 0.027 1.7 9.0 3.0 1 23 1119 1141 1119 1141 0.96 15 23 0.66 40 4.6 0.2 2 23 1168 1190 1167 1190 0.90 16 23 0.018 1.1 9.5 5.1 1 23 1236 1259 1236 1259 0.98 17 23 0.056 3.4 8.0 1.6 1 23 1296 1319 1296 1319 0.92 18 23 0.00013 0.0078 16.3 4.8 1 23 1356 1379 1356 1379 0.98 19 23 0.0022 0.13 12.4 0.8 3 23 1413 1433 1411 1433 0.95 20 23 4.1e-06 0.00025 21.0 0.4 1 23 1439 1461 1439 1461 0.99 21 23 3.6e-07 2.2e-05 24.4 2.6 1 23 1467 1489 1467 1489 0.99 22 23 0.00012 0.0071 16.5 0.7 1 23 1495 1517 1495 1517 0.99 23 23 0.00088 0.053 13.7 0.1 1 22 1523 1544 1523 1547 0.89
Sequence Information
- Coding Sequence
- ATGACTGATAATACATCTTGCTTTATAAAAGGAAAGCTATATGGCTGTAGGACTTGTTTGGAGTCTACTAACTCTAACAATTTCTTATTGACAGAATGTTTGGCCGGCCTAGAGAATCGTTTGAAAAACTTCTTTCAATCATTAATTATACAGAGTAACGACGATGAGAAACTGCCTCAATATTTGTGCAATAATTGCAATGAAAAACTACAGAATATTCATGAGTTCATACAACAAACAATAAGAACAAATGAATTTTTTAAGACTCAACCCGAAGAAGAAGTTTTTACTGAATGCATCGATGACACATTTTTATGGGAAGATTCACTGTCATTTAGTGAAAAACATTTGAAAAATGATAGCGATAATGATAAGAGCTGTATGTTAGATTGTTTAGTGGAAACTGTCATTGATATACCGATTGATGGTGCCCTTAAAAGTCAGCAAGTAGAAAATGATTATCTACAGATTAAGAAAGAGAAAATACCCAAGAATTGTGTTCGTTCTGCAGGCGAATGTAATGAAAATACCGAATCTAAGCGAGGAGTCATATCAAGAGACAAAGAAATAGAAAGCAATCTACTAGAAACTATTAATAAGGATTTGGCGGAACCGATGAAAAAAGAAGATGACATCTCAACTCATAATTTGAATTTTTTATCGAACTTTTCATCTGGTGCAGAAGATGAGGATGAAGAATACATCCCACCGAAATCAAAGATAAGAAAATCAAATGTAGATCAAAAAGTGGTGAAAACCCGTAAAGGCCGTCCCAGATCACAGGAGTTTTCGAAAATaaaaaaaaTCAATGATCGTTTTCTTTGTTATATGTGTGATAAAACGTTTTCTTTACGAAAAGATGTAACGCGTCACGTAAATACTATACATTGTGATAAGGCTCACTTTCAATGCGAATTTTGTGGACATCAATTTAAACGTAAAGATAAAGTACGTGAACATATAAGAAGTTATCATCAGCCTACACCATGTATAGATACCGATATTTCTAAGAGCATTTCAACTGGAGTTAAAACTAAACTTAGTCAATGGAAATTCGGTGATTGCTTGTACAGTAAACCTACTAAACGTCGTTTGATTGAGTGTAAATTATGTGAAATAAGATTTTCAAGTGCGATTAAATTACGTCAACATTTGGAAACGCATAGAGATTCAAAAACATTGCAACATCTGCAATTATATAATAACATTATAAAGCAACTTTACCCGAATGCGAATACTATTGAGAAAGCTAAAGAGATTATAGAAAAAGAAATTTCTTTAAATCAATGGTCACGATTTTATCTTATACTTAATGAATATGGTTATGAAGTATCGATTAGTGATACCGAAAATGAAATTGATGAGAGCAATGATGATAATGATAAGATTTACAAAAAAGGCTACCAATGCGAACTATGTGAATTGAAATTTGAATATAAATATCAGATTTTTACTCATATGAAAGAGCAACATCATGAAAGTGATGAGAAAATACCTTATAAATGTAAATTATGCAAATTGGATTTCCTTTGTTCACATATGTTCGAGCAACATTCACGTACTCATTGCCGTAATAGAGATAAATCTTTCGTTTGTATACGATGCCCGGGAAAATTTGCATGGATAGAGAGTATGAGACAACACAATTGTTTACATAAAGCGACCTATTTAACGGCTATAAAGGATAAAAACAATCCTTTAAAATGTTCTATATGTCGTACTACTTTTAAAACAACTTTTAAACTAAGTGCACATATGAAAATGCATGCAACATTTGAATGGAGTAATCCGCAAGAGTACCGATGTGCTTTATGTAGTAAAAATTTTTCAAATTTAAAACAATTACGCGAGCATTTGCCTGTTCATCAAGATGGCGAAACTGATATTGATTTTGAAAATTCTCTTTACATAAAAACTTTTATTAAATTGGAAAATGGAAATTTAGATCGAACGGCTTTGAAAAATGTCATAACAAATGATTATAATAAGAAACAATTAACACGTTTCTATTGCGCTTTGAATAAAGATGCTAAAGAACTCGATTTAATGGACTCGGAAAGTGAAATAGAAGGGGAGGAGGAGACTTCCCAAACTTATAAGTGTTTAGTTTGTCATATGGATTTTAGACGTAGAAAATCCTTAATTGAACATCAAATGACAAGCCATGCGGAAATCTCGTTACCTTTACGTTGTGATATATGTTCTGGGCAATTCGCTTGTCAAGAAGTTCTCGATCATCATCAATATCGTAATTGTTTGAACGAATATCGTCAACAACAAAGTTTACGGTGCGACACTTGTGCGTTAGATTTTGTCTGGCCCCGAAACTTAGCGAAGCATAAGCAAATAAAGCATTCGAATCCTTGTGACCAAAATAAATTTGGTAATAAATTAAAATGTGATGAGTGCGATAAAGTATTTATTTGGCTAAAAGATTTAAAACGTCATAAGGTTATACATCGTCCAGATGAGAAAAAATACGCTTGTCCACATTGCGAAAGGAAATTTTATCGTAAAGATCATTTATTAGCGCATATACGTACCCATGATCCCAACAGTGTCCCAATAACATTGAATTTAAATCGAAAAGTAAATAATTTTGATGTGAACTTAAGTAGACCTCATGGTTATAAACAGATCAAATGCATGATTTGTTATTCGCAGCATACAACTATACAGGATTTACGCAATCATTTAGCAAAACATCAATACACAATTGATTTTGAAAGGCGTAAAGAAATGGAAGTAGTTGATTTCATTTCGGCACAATTCTATCCTGACGAAGAGATAATGGCAGAGTCTACGTTAATGACACGAATTGGTATTGATTTAACCAACAAATATAAATTAGAACGTTTTTATTCAATAACAAATGAAAATGGTTATGAGTTAAGTTTGGATAGTTCAGAAACTGAACTCGATTCGGAAGATGATGATGAAAAATCGAAAATTATTACAAAAGCAAATTATAAATGCGATATATGCCCGCATTTGAGTTTTGCACGTAAATATAAAGTATTTCAACATCATGAAAGCGAACATACTTGGGAGGAGGCACGTCACATTTGCTGTACATGTAATGCCCGTTTTTTGTCATCCGAAATTTTGGAACATCATTACAAACAACAATGTAAAAATCTTAATAAACGGCATCAATGTCGTAAATGTTCTTTGCGTTTCATGTGGAAAGATAATCTTAAAGTTCACTTTACAATGATGCACGCTCACGAAAATGGAAATGAGAGTGAACTGAACCGACGTTATGAATGCTTCCTATGTCAACTCAAATTTGAGCACAAATACGATCTTAAACGTCATATGAGTTTACATGGCGACAGTAAAGATATGCATTTGCATTATTGCGTATTATGCCCACGAATGTTTTATGCTCGGGAAAATCTTTGTACTCACGTTAAGGAACATGGATTAAACGTTATTGATATTGATTGTATGGAAAGCATTATTACTTCGACATGTTGGCCTAACGGTGACAAAGTGATTGAATGCAAAATATGTAATAGGAATTATTTAACTATGGCAAACTTATCTGAACATTTCCAAGAAATGCATTCATCTTCCATTTTATCTGGTAGTTCAGAAAATTATTCGATAACTAATGAACGAGGATATGAGCTGCATTTGGAATGGAATTCTGAAACGGAAGCAGAAGATGAGTTGATGACCGGTCAATTGGTGAAAAATTCATATACTTGTGAAATTTGCAATTTCCAATGTAAACGGAAATATAAAATAGCGCAACATCAACGTTCATTCCATCCGTACGAAACACTTACATTAAAATGTGAATTTTGTATTTTTAAAACAGTTTCTCAGAAATTACTTGACTATCATAAAGCCAGTCAATGTTTAAATAACGAAAAACAATACACTTGTAACAAGTGTTCATTTCGTTTCATGTGGCAAGAAAATCTAAAGAAACATGAAGAATTACAGCATGCTGTTAAAGTAGCAGTAGATGTTAATAAACAGGCGGAAGATTGCGGTATAAAATCGTCTTCATTACCTCTGCCGTTGCAACAAAATTCCTCAAAAGAGATGAAATTATTTAAATGTCCTGATTGTCATCGCACCTACAATCGTAAAGATCGTTATAATGCACATTTGAAAAAATATCATAATCCAGTTAGTGGTCAACCTTTATCGGTAGTTAGAGATAAGTCCTCTAAGAGAGATATTAGCAAACAAACTGTGGCAAAAGTGAAGCAAAAACATTTATGTGCTTTGTGCGGTTTAGCTTTGTCTTCTGCCTCCTGTTTAGCTATACATATGCGGCGTCATACTGGTGAACGTCCCTATAAATGTGACATATGTGAACTGGCTTTTGCTAGACGCACTGATTTAATTTCTCATCGTCGCACTCATACTGGAGAAAGACCGTACAAATGTACGATATGTGCGAAAACATTTATACGCTCATATAAAttgactacgcacatgcgtacacataccggtgaaagaccttataaatgcacattctgtgaCAGCGCATTCGCTCAATCGAATGATTTGGTTATACATCGTCGTCGCCATACTGGGGAAAGGCCGTACTTATGTGATATATGTGGAGAGGGTTTTATACAGGGCAGCGCTCTAAAGACTCATCGTCGGCAAAAAGGTCATCATGTCAATAATACAGATATAAACACTGTAAGGCATTTACCTGCATTTCCGGTGGATTTTTAA
- Protein Sequence
- MTDNTSCFIKGKLYGCRTCLESTNSNNFLLTECLAGLENRLKNFFQSLIIQSNDDEKLPQYLCNNCNEKLQNIHEFIQQTIRTNEFFKTQPEEEVFTECIDDTFLWEDSLSFSEKHLKNDSDNDKSCMLDCLVETVIDIPIDGALKSQQVENDYLQIKKEKIPKNCVRSAGECNENTESKRGVISRDKEIESNLLETINKDLAEPMKKEDDISTHNLNFLSNFSSGAEDEDEEYIPPKSKIRKSNVDQKVVKTRKGRPRSQEFSKIKKINDRFLCYMCDKTFSLRKDVTRHVNTIHCDKAHFQCEFCGHQFKRKDKVREHIRSYHQPTPCIDTDISKSISTGVKTKLSQWKFGDCLYSKPTKRRLIECKLCEIRFSSAIKLRQHLETHRDSKTLQHLQLYNNIIKQLYPNANTIEKAKEIIEKEISLNQWSRFYLILNEYGYEVSISDTENEIDESNDDNDKIYKKGYQCELCELKFEYKYQIFTHMKEQHHESDEKIPYKCKLCKLDFLCSHMFEQHSRTHCRNRDKSFVCIRCPGKFAWIESMRQHNCLHKATYLTAIKDKNNPLKCSICRTTFKTTFKLSAHMKMHATFEWSNPQEYRCALCSKNFSNLKQLREHLPVHQDGETDIDFENSLYIKTFIKLENGNLDRTALKNVITNDYNKKQLTRFYCALNKDAKELDLMDSESEIEGEEETSQTYKCLVCHMDFRRRKSLIEHQMTSHAEISLPLRCDICSGQFACQEVLDHHQYRNCLNEYRQQQSLRCDTCALDFVWPRNLAKHKQIKHSNPCDQNKFGNKLKCDECDKVFIWLKDLKRHKVIHRPDEKKYACPHCERKFYRKDHLLAHIRTHDPNSVPITLNLNRKVNNFDVNLSRPHGYKQIKCMICYSQHTTIQDLRNHLAKHQYTIDFERRKEMEVVDFISAQFYPDEEIMAESTLMTRIGIDLTNKYKLERFYSITNENGYELSLDSSETELDSEDDDEKSKIITKANYKCDICPHLSFARKYKVFQHHESEHTWEEARHICCTCNARFLSSEILEHHYKQQCKNLNKRHQCRKCSLRFMWKDNLKVHFTMMHAHENGNESELNRRYECFLCQLKFEHKYDLKRHMSLHGDSKDMHLHYCVLCPRMFYARENLCTHVKEHGLNVIDIDCMESIITSTCWPNGDKVIECKICNRNYLTMANLSEHFQEMHSSSILSGSSENYSITNERGYELHLEWNSETEAEDELMTGQLVKNSYTCEICNFQCKRKYKIAQHQRSFHPYETLTLKCEFCIFKTVSQKLLDYHKASQCLNNEKQYTCNKCSFRFMWQENLKKHEELQHAVKVAVDVNKQAEDCGIKSSSLPLPLQQNSSKEMKLFKCPDCHRTYNRKDRYNAHLKKYHNPVSGQPLSVVRDKSSKRDISKQTVAKVKQKHLCALCGLALSSASCLAIHMRRHTGERPYKCDICELAFARRTDLISHRRTHTGERPYKCTICAKTFIRSYKLTTHMRTHTGERPYKCTFCDSAFAQSNDLVIHRRRHTGERPYLCDICGEGFIQGSALKTHRRQKGHHVNNTDINTVRHLPAFPVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748394; iTF_00749860; iTF_00750636; iTF_00746874; iTF_00749120;
- 90% Identity
- -
- 80% Identity
- -