Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold201:399975-407285[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.00016 0.012 16.1 1.1 1 23 270 293 270 293 0.95

2 24 0.00033 0.026 15.1 3.1 1 23 299 322 299 322 0.97

3 24 0.0001 0.0078 16.7 0.2 2 23 363 384 362 384 0.96

4 24 0.00079 0.06 13.9 2.4 1 23 462 485 462 485 0.97

5 24 0.00043 0.033 14.7 2.8 2 23 562 583 561 583 0.97

6 24 0.0012 0.091 13.3 1.6 1 20 594 613 594 616 0.93

7 24 0.0066 0.51 11.0 2.4 1 23 690 713 690 713 0.94

8 24 6.5 5e+02 1.6 2.0 1 20 720 739 720 741 0.80

9 24 0.068 5.2 7.8 0.5 1 23 752 775 752 775 0.97

10 24 0.0014 0.11 13.1 0.2 2 23 789 810 788 810 0.95

11 24 1.1e-06 8.2e-05 22.9 3.6 1 23 817 839 817 839 0.98

12 24 0.22 17 6.2 3.1 1 23 980 1004 980 1004 0.93

13 24 0.73 56 4.6 2.9 1 23 1041 1064 1041 1064 0.94

14 24 0.0051 0.39 11.3 6.1 1 23 1078 1100 1078 1100 0.97

15 24 0.0036 0.28 11.8 2.6 1 23 1109 1131 1109 1131 0.96

16 24 0.013 1 10.0 0.8 2 23 1158 1180 1157 1180 0.93

17 24 0.02 1.5 9.5 4.6 1 23 1225 1248 1225 1248 0.97

18 24 0.054 4.2 8.1 2.3 1 23 1285 1308 1285 1308 0.93

19 24 0.00013 0.01 16.3 4.8 1 23 1345 1368 1345 1368 0.98

20 24 0.0023 0.17 12.5 0.8 3 23 1402 1422 1400 1422 0.95

21 24 4.2e-06 0.00032 21.0 0.4 1 23 1428 1450 1428 1450 0.99

22 24 3.7e-07 2.8e-05 24.4 2.6 1 23 1456 1478 1456 1478 0.99

23 24 0.00012 0.0092 16.5 0.7 1 23 1484 1506 1484 1506 0.99

24 24 0.00071 0.055 14.0 0.1 1 22 1512 1533 1512 1536 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.00016	0.012	16.1	1.1	1	23	270	293	270	293	0.95
2	24	0.00033	0.026	15.1	3.1	1	23	299	322	299	322	0.97
3	24	0.0001	0.0078	16.7	0.2	2	23	363	384	362	384	0.96
4	24	0.00079	0.06	13.9	2.4	1	23	462	485	462	485	0.97
5	24	0.00043	0.033	14.7	2.8	2	23	562	583	561	583	0.97
6	24	0.0012	0.091	13.3	1.6	1	20	594	613	594	616	0.93
7	24	0.0066	0.51	11.0	2.4	1	23	690	713	690	713	0.94
8	24	6.5	5e+02	1.6	2.0	1	20	720	739	720	741	0.80
9	24	0.068	5.2	7.8	0.5	1	23	752	775	752	775	0.97
10	24	0.0014	0.11	13.1	0.2	2	23	789	810	788	810	0.95
11	24	1.1e-06	8.2e-05	22.9	3.6	1	23	817	839	817	839	0.98
12	24	0.22	17	6.2	3.1	1	23	980	1004	980	1004	0.93
13	24	0.73	56	4.6	2.9	1	23	1041	1064	1041	1064	0.94
14	24	0.0051	0.39	11.3	6.1	1	23	1078	1100	1078	1100	0.97
15	24	0.0036	0.28	11.8	2.6	1	23	1109	1131	1109	1131	0.96
16	24	0.013	1	10.0	0.8	2	23	1158	1180	1157	1180	0.93
17	24	0.02	1.5	9.5	4.6	1	23	1225	1248	1225	1248	0.97
18	24	0.054	4.2	8.1	2.3	1	23	1285	1308	1285	1308	0.93
19	24	0.00013	0.01	16.3	4.8	1	23	1345	1368	1345	1368	0.98
20	24	0.0023	0.17	12.5	0.8	3	23	1402	1422	1400	1422	0.95
21	24	4.2e-06	0.00032	21.0	0.4	1	23	1428	1450	1428	1450	0.99
22	24	3.7e-07	2.8e-05	24.4	2.6	1	23	1456	1478	1456	1478	0.99
23	24	0.00012	0.0092	16.5	0.7	1	23	1484	1506	1484	1506	0.99
24	24	0.00071	0.055	14.0	0.1	1	22	1512	1533	1512	1536	0.89

Sequence Information

Coding Sequence: ATGAGCGATAATACATTTTGTTTGATAAAAGGAAAACCGTATGTTTGTCGAACTTGTTTAGCGGTTTGCAGTTCTGAAAATGTCTTGTTGACAGAATGCTTGGCCGGCGTAGGAAAACTCTTAAAAAATTTCCTTCAATCGTTGCTCACGAGCAATTACAGTGAGAAGATGCCGCAATATTTGTGCAATAATTGCAATGAAAAACTGAAGAATACTAATGAATTTATACAACAATTGATAGAAACCCATGAGTTTTACGAGATCCAGCTTGAAGAAAAAGTTCTTGCTGGATGTACTAACGATTCATTCGTATGGGAAGACTCTCTGCCCTATAGCGAGAAAGACTTGAAAAATGGTAATTCTAACGATAAGGGCGGTACGGTGGATTGCTTAGTGGAAACTGTCATCGATATACCGATTGATGGTGCTCTTAAATGTCAACAAATGGAAAATGATTACCTGCAGATTAAAAAAGAGAGTATGACCGAGAATTGCCACCATTCCGATTTGGGCTGTATCGATGATGAAGAATCTAAGGAGGGCTTCATAAGGAGTAACCAAGTAGAAAAGATTCCATCAGAAACTGTTAACAAAGATTTTCTGGCACCGATAACGAAACAAGATGATATATCAACTGATAATTTAAATTTCTTACCCAACTTTTCATCTGGTACGGAGGACGAGGATGACGAATATATCCCACCGAAACCAAAGATACGAAAATCAATCATAGATAAAAAAGTGAAAACTCGTAAAGGTCGACCCAGATCTCAGGAGTTTTCGAAAATaaaaaaaGTCAATGACCGTTTCCTTTGTTATATGTGTGATAAAACGTTTTCTTTGCGAAAAGACGTAACACGTCATATAAACACTATACATTCCGATAAGGCTCACTTTCAATGTGAATTTTGTGGCCATCAATTTAAGCGCAAGGATAAAGTACGGGAACATATAAGAGCTTATCATCAACCCACGCATACGAAGACAAATACTTCTAAATGCATTCCAAATGGATTGAAAAGTAGACTTAACCAATGGAAATACGGCGATTGCTTGTACAGTAAGCCTACTGCACGCCGTCTGATTGAATGTAAATTATGTGAAACACGATTTTCAAACGCAGCTGAATTACGTCAACATCTTGAAATGCATCGAGATTCAAAAACCTTACAACATTTACAGTTGCGTAGTAATGTCGTAAGGCAACTGTACCCGAATGCCGATACCATTGAGAAAGCTAGAGAAACTATAGAGAAAGAAAtttttttGAATCAATGGTCACGATTTTATATTATACTTAATGAGCACGGCTATGAAGTTTCGATCAGTGACACTGAAAATGAAGTTGATAAGAGCGACGATGATGAAGTTTACGAAAAACGCTATCAGTGTGAGTTGTGTCAACTGAAATTTTCATATAAATACCAAGTTTTTAGTCATATGAAAGAGCAGCATCGCGAAACTGACAAGGAAATACCCTACAAATGCAAATTATGTAAACTGGATTTTCTTTGTTCACGTATGTTCGAGCAACATTCGCGTACTCATTGTCGTAATAGAGATAAATCTTTCGTTTGCATACGGTGTCCGGGAAAGTTTGCGTGGATAGAGAGTATGAGACAACACAATTGTTTGCATAAACCGAGATTTTTAACGGGAACGAAGGATAAAAACAATCCCTTAAAATGTTCTATATGTCGTACGACTTTTAAAACAACTTTAAAGCTAAAGACACATATGAAAATACATGCGGCCATTGAATGGAGCAATCCGCAAGAGTTCCGATGTGCTTTATGTGATAAACATTTTTCAAAATTAAAACAATTACGAGAACACTTGCCTGTGCATCAGGATGGCGAAACTGATATTGATTTTGAAAATTCTCTTTACATGAAAACATTTGTTAAGTTGGAAAATGCTTTAGATCGAGAATCTGTGAAAAAAGTCATAGCAAATGATTACAGTAGAAAGCAACTTACGCGATTTTATTGTGCTCTAGATAAAAATGCTGAAGAACTCGACGTGATGGACTCGGAAAGTGGGTCGGAAGAAGAGCATCGCCATTCTTACAAGTGTTTGCAATGTCATTCGGACTTCAGACGTAGATCATCCTTGGTTGAACATCAAACAGCGAATCATGCGGGAATGTCCTTACCATTTCGTTGTGATGTATGCTCGCGGCAATTCGCTTGTCAAGAAGTTCTCGATCATCATCAATATCGCAATTGTTTAAACGAATATCGCCAACAAAGTTTTCGTTGCGATATTTGCGCGTTAAATTTTGTTTGGTCCAGAAATTTAGCGAAACATAAACAAATGAAGCATTCCGATCGTGGCGACCAAAACAAATATGGTAATAAATTAAAATGTGATGAGTGCGACAAAGTATTTATTTGGTTAAAGGATTTAAAACGGCATCGGGTTATACATCGACCAGATGaaaaaaaaTATGCTTGTCCCCATTGCGAAAGGAAATTTTATCGTAAAGATCATTTATTAGCACATATACGAACTCACGATCCCAATAGCGTGCCAATAACATTGAATTTAAATCGAAAAGTAAACAATTTTGATGTGAACCTAAGCAGACCGCATGGTTATAAACAGATCAAATGCATGATTTGTTATTCTCAGCACACAACTATACAGGATTTGCGTAATCATTTAGCAAAACATCAGTATACGATTGATTTTGAAAGGCGCAAGGAAATGGAAGTTGTTGATTTCATTTCTGCACAATTCTATCCCGAAGAAGAGATAATGACGGAGGCGGTCTTAGTGAAGCGAATTGGTATTGATTTAACCAACAAACATAAACTGGAACGTTTTTATTCCATAACAAATGAAAATGGTTACGAGTTAAGTTTGGAAAGTTCGGAAACTGACCTCGATTCGGAAGATGATGATGAGAGTGCCAAACTTACTACGAAAGGACGTTATAACTGCGATATATGCCCCCATTTGAGTTTTGCGCGTAAATACAAACTATTTCAACATCACGAAAATGCACACACTTGGGAGGAGGGGCGTCATGTTTGCAGTAGCTGTAATGCCCGGTTTTTGTCCCCCGAAATATTGGAGCATCACTACAAACAACAGTGTAAAAATCCCAATAAACGGCATCAGTGCCGCAAATGTTCATTGCGTTTCATGTGGAAAGATAACCTTAAATCGCACTTTGCTATGATGCACGCCCGCGAAAATGCAAATGAGAATGAAATGAATCGCCGTTATGAGTGCTTCCTGTGTCAGCTCAAATTTGAGCATAAATGCGATCTAAAGCGTCATATGAGTTTGCACGGCGACAGTAAAGATGTGTACTTGCATTACTGTGTATTATGTCCACGTATGTTTTATTTACGGGAAAATCTTTGTGCGCATATTAAAGAACATGGCATAAAAGTCACCGACATTGATTGTATGGAAAGTATTATTGCTTCGACGTGCTGGCCTAATGGCGACAAAGTGATTGAATGCAAAATATGTCACAGGAATTATCCAACCATGGCAAACTTATCTGAACACTTTCAACAAATGCATGTATCTGCGATTTTGTCTGGTGGTTTGGAAAACTACTCGATAATCAATGAACGAGGATATGAGCTACATTTGGAATGGAATTCTGAGACGGAAGCAGAAGAGGAGTTAACTGGCTGTTTGGCGAAAAATTCGTATATTTGTGAAGTTTGTAATTTTCAGTGTAAACGAAAGTATAAAATGGCGCAGCATCAACGCTCTTTCCATTCATATGAAACACTTACCTTAAAATGTGAATATTGCATTTTTAAAACAGTCTCGCAGAAAATACTTGACTATCATAAAGCAAGCCAATGTTTGAATAATGAAAAGCAATACACTTGCAGTCATTGTTCATTTCGCTTCATGTGGCAAGAAAATCTAAATAAACATGTGGAATTACAGCATACTCTTAAAGTAGCTGTGGATGTTACCAAACAGGAGGAAAGCTCCAGTGCAAAATCGTCTTTGCTACCTCTCCCCCTGCAGCAGAATTCCCCAAAGGAGATGAAGTTATTTAAATGCCCTGATTGCCATCGTACTTACAACCGTAAAGATCGTTACAACGCACATTTGAAAAAATATCATAACCCAGTTAACGGCCAACCTTTACCAGTGGTAAGGGGCAAGTCTTCCAAAAAGGATGCCAACAAACAAGTTGCCATCAAAGTGAAGCAAAAGCATTTGTGTGCTTTGTGTGGTTTAGCTTTGTCTTCTGCATCCTGTTTAGCTATACATATGCGTCGACATACCGGCGAACGTCCCTATAAATGTGATATATGCGAACTAGCTTTCGCTAGGCGTACTGATTTAATTTCACATAGACGCACGCATACTGGCGAAAGACCTTACAAGTGCACGATATGCGCGAAAACCTTTATACGCTCTTATAAATTGACTACGCATATGCGCACACATACTGGTGAAAGGCCGTACAAATGCACATTCTGTGACAGTGCTTTTGCTCAATCGAATGATTTGGTTATACATCGTCGTCGTCATACCGGCGAAAGGCCTTACTTATGCGATATATGTGGAGAGGGTTTCATACAGGGCAGCGCTCTAAAAGCACATCGTCGACAAAAGGGTCATCATGTCAACAATACAGACCTGCATACTTCAAAACATTTGCCTGCATTTCCTGTGGAGTTCTAA
Protein Sequence: MSDNTFCLIKGKPYVCRTCLAVCSSENVLLTECLAGVGKLLKNFLQSLLTSNYSEKMPQYLCNNCNEKLKNTNEFIQQLIETHEFYEIQLEEKVLAGCTNDSFVWEDSLPYSEKDLKNGNSNDKGGTVDCLVETVIDIPIDGALKCQQMENDYLQIKKESMTENCHHSDLGCIDDEESKEGFIRSNQVEKIPSETVNKDFLAPITKQDDISTDNLNFLPNFSSGTEDEDDEYIPPKPKIRKSIIDKKVKTRKGRPRSQEFSKIKKVNDRFLCYMCDKTFSLRKDVTRHINTIHSDKAHFQCEFCGHQFKRKDKVREHIRAYHQPTHTKTNTSKCIPNGLKSRLNQWKYGDCLYSKPTARRLIECKLCETRFSNAAELRQHLEMHRDSKTLQHLQLRSNVVRQLYPNADTIEKARETIEKEIFLNQWSRFYIILNEHGYEVSISDTENEVDKSDDDEVYEKRYQCELCQLKFSYKYQVFSHMKEQHRETDKEIPYKCKLCKLDFLCSRMFEQHSRTHCRNRDKSFVCIRCPGKFAWIESMRQHNCLHKPRFLTGTKDKNNPLKCSICRTTFKTTLKLKTHMKIHAAIEWSNPQEFRCALCDKHFSKLKQLREHLPVHQDGETDIDFENSLYMKTFVKLENALDRESVKKVIANDYSRKQLTRFYCALDKNAEELDVMDSESGSEEEHRHSYKCLQCHSDFRRRSSLVEHQTANHAGMSLPFRCDVCSRQFACQEVLDHHQYRNCLNEYRQQSFRCDICALNFVWSRNLAKHKQMKHSDRGDQNKYGNKLKCDECDKVFIWLKDLKRHRVIHRPDEKKYACPHCERKFYRKDHLLAHIRTHDPNSVPITLNLNRKVNNFDVNLSRPHGYKQIKCMICYSQHTTIQDLRNHLAKHQYTIDFERRKEMEVVDFISAQFYPEEEIMTEAVLVKRIGIDLTNKHKLERFYSITNENGYELSLESSETDLDSEDDDESAKLTTKGRYNCDICPHLSFARKYKLFQHHENAHTWEEGRHVCSSCNARFLSPEILEHHYKQQCKNPNKRHQCRKCSLRFMWKDNLKSHFAMMHARENANENEMNRRYECFLCQLKFEHKCDLKRHMSLHGDSKDVYLHYCVLCPRMFYLRENLCAHIKEHGIKVTDIDCMESIIASTCWPNGDKVIECKICHRNYPTMANLSEHFQQMHVSAILSGGLENYSIINERGYELHLEWNSETEAEEELTGCLAKNSYICEVCNFQCKRKYKMAQHQRSFHSYETLTLKCEYCIFKTVSQKILDYHKASQCLNNEKQYTCSHCSFRFMWQENLNKHVELQHTLKVAVDVTKQEESSSAKSSLLPLPLQQNSPKEMKLFKCPDCHRTYNRKDRYNAHLKKYHNPVNGQPLPVVRGKSSKKDANKQVAIKVKQKHLCALCGLALSSASCLAIHMRRHTGERPYKCDICELAFARRTDLISHRRTHTGERPYKCTICAKTFIRSYKLTTHMRTHTGERPYKCTFCDSAFAQSNDLVIHRRRHTGERPYLCDICGEGFIQGSALKAHRRQKGHHVNNTDLHTSKHLPAFPVEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00747635;
90% Identity: iTF_00748394;
80% Identity: -