Gbre000847.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- Hr39
- Assembly
- GCA_000671755.1
- Location
- Scaffold71:342908-387167[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.66 4.7e+03 -3.7 7.8 72 172 158 260 139 271 0.52 2 4 2 1.4e+04 -7.3 10.3 54 143 249 354 237 403 0.46 3 4 7.6e-17 5.5e-13 48.8 9.1 1 151 499 684 499 698 0.60 4 4 1.8e-81 1.3e-77 261.6 1.3 186 408 683 893 678 893 0.94
Sequence Information
- Coding Sequence
- ATGTCTACTATTAAAACTGAAAATGCTAGCGGGCTAGCTATAGTAAACACCACAGGGACGACAACAGGCGGTGGCGGTAATTCATCATTTCAATTGCCGGTCAATATGAGTAATCATATGATGACCGATCGAACCTCGTCCATCATTACTTCCACTACTACTACAAATCGCAATATATCTGTAACAAACATTAAATGTGAAGTTGATATAGATGTGACTACATCCTCAGCTTCAAGTGGAAATGCGGTGTCAATAGGTTATTATAATGGAGCACGTGTAGCTAATTCCACCAGTCTAGGCATTCGGATACCAGTGACTAAAGCTGAAGACTCGGATTCGGAGACAGAATTAACTAATATAGAAAATCTTAAAGCTAATCGAAGAATGACCGGCTCGGTTGGCAATTTAGGTAGTGGCAATCATCACAATGCACCGCGGCCTATGTCTTGGGAGGGAGAGCTTTCGGAAAATGAGGATACAACGGAAGCAGAATTAATGGATACAGATACTACCATGAGTAATAGTGCTGTATCGGAACCACAAAATTCGACAACAGTGATTAAAAGCGAAGCGTCAACTACAACATCATCTACTGCACAAACGATAAAGCCTGAAATAGAGCAAATATCAGTGGAAGTTCATCATCATACAGCATCAAATAACAGTGGTATAAGTGGTATTTATCATCCTAAATTAAAATTAGCACCTACGCAAAGCGATCCAATTAATCTAAAATATGAGCCAACTGACCATTCGGGTTTAAATAATTCGCCTTTGTTGGCGCGTCAGAAGTCGAGTACAGCCCTAACTCATCTGCCCGCCAATCCAAGTCCCGACTCGGCTATACATTCCGTTTACACTCACAGTTCACCTTCGCAATCACCTTTAACATCTAGACATGCTCCATATACTCCATCACTGTCGCGCAATAATAGTGACGCTTCCCACAGCTCTTGTTACTCTTATTCCTCAGAATTTAGTCCTACGCACTCGCCTATCCAAGGTCGCCATCCCGCTCCACATGTAGTATATGGTAATTATAATGGTTCAAGCACCGGTAATTTGCATCATTCCACTTTACTTTACCGGCCTCTCAGTACGACAGCCAATTCCACAACTTCTGGCAACAAATTAGAAACGGTTGGTAATGAAGTACAGAATTTAAGTATGGATGCAAATGGTCAAAATTCTGCGTCTACTGGTGCTTTTAGTATCACCACAGATGTGAATGGTTTACCTACTTCACCAGCAGCTGGAATTTCGCGGCAGCAACTCATTAATTCCCCGTGCCCTATTTGTGGAGATAAAATTTCAGGCTTCCATTATGGCATTTTCTCATGTGAGTCATGTAAAGGCTTTTTTAAACGCACCGTCCAGAATCGCAAGAATTATGTATGTGTCCGTGGCGGACCATGTGTGGTAAGCATTACCACCCGCAAAAAGTGCCCTGCTTGTCGTTTTGAAAAGTGTCTTCAAAAAGGCATGAAATTAGAAGCTATACGGGAAGATCGCACCAGAGGTGGACGTTCTACGTACCAATGTTCCTATACATTGCCAAATTCTCTAATGAGTCCAATTCTAACAGCAGATCAGCAACAAAATTCAGCACAAAACTTAATAAATGCTcaaacacaacaacaacagccacagtctcaaattcaacaattacaacaaccgcaacagcaacaacGTTTAGTCGCACCTTTACAGAGTGGTTACAATAGCACTCCCAATGCCAACGGTTATGTTTCGGGTGTAGGATCCAACATTAAAACCGAACATTCGGTAATCACTTCTTCTGCCTCGAACAATATCAGTTTAAATTCTAGTTCGCGTACTTTCATCGTAAACTCCTCTTCTTCTACTGGTGACAGCGCTACACACGACAGCAGTATTCCCACTCTCTTACAAGAAATTATGGACGTGGAACATCTTTGGCAATATACGGATGCAGAATTAGCGCGACTTAATCAACCATTGATTTCGACGTCTTCGAGTTCGACTTCTCCAAACACTGCTTCCCCAAATGCAGCAACAACGAGTCAAATGACCAATCCACTGCTGGCCAGTGCGGGCCTATCATCGACTACTAATCCCGATTTAATAGCACATCTTTGTAAAGTAGCCGACCATCGTTTATATAAGATAGTTAAATGGTGCAAAAGTTTGCCGCTATTCAAAAACATATCGATTGACGACCAAATATGCCTGCTAATCAATTCGTGGTGTGAACTTTTATTGTTCTCTTGCTGCTATCGTTCCATAGATACACCTGGAGAAATTAAAATGTCACAGGGCAAAACTGTTAACTTGGCTCAAGCAAAATTAACTGGTTTTCAGACCTGCATTGAAAGAATGCTGAATCTGACAGATCATTTAAGACGTTTAAGAGTTGATCGTTACGAATATGTGGCAATGAAAGTGATAGTATTATTGCAATCAGATACGTCGGAATTGCAAGAACCCGTAAAGGTTCGAGAATGCCAAGAGAAAGCTTTGCAAAGCTTGCAGGCTTATACGTTGGCTCATTATCCGGATACTCCTTCCAAGTTTGGCGAATTACTTTTACGTATACCCGATTTGCAACGAACATGTCAACTGGGTAAAGAAATGCTTTCTATTAAATCTCGTGATGGTGGTGATTTTAATTTATTAATGGAGCTTCTAAGAGGAGAACATTGA
- Protein Sequence
- MSTIKTENASGLAIVNTTGTTTGGGGNSSFQLPVNMSNHMMTDRTSSIITSTTTTNRNISVTNIKCEVDIDVTTSSASSGNAVSIGYYNGARVANSTSLGIRIPVTKAEDSDSETELTNIENLKANRRMTGSVGNLGSGNHHNAPRPMSWEGELSENEDTTEAELMDTDTTMSNSAVSEPQNSTTVIKSEASTTTSSTAQTIKPEIEQISVEVHHHTASNNSGISGIYHPKLKLAPTQSDPINLKYEPTDHSGLNNSPLLARQKSSTALTHLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHPAPHVVYGNYNGSSTGNLHHSTLLYRPLSTTANSTTSGNKLETVGNEVQNLSMDANGQNSASTGAFSITTDVNGLPTSPAAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCVVSITTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSLMSPILTADQQQNSAQNLINAQTQQQQPQSQIQQLQQPQQQQRLVAPLQSGYNSTPNANGYVSGVGSNIKTEHSVITSSASNNISLNSSSRTFIVNSSSSTGDSATHDSSIPTLLQEIMDVEHLWQYTDAELARLNQPLISTSSSSTSPNTASPNAATTSQMTNPLLASAGLSSTTNPDLIAHLCKVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCYRSIDTPGEIKMSQGKTVNLAQAKLTGFQTCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELQEPVKVRECQEKALQSLQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLSIKSRDGGDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749017;
- 90% Identity
- iTF_00747533; iTF_00749017; iTF_00749000; iTF_00748282; iTF_00748261; iTF_00750524; iTF_00750505;
- 80% Identity
- iTF_00747533;