Gale035600.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990063.1:14592870-14594072[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 1.2e+02 4.1 0.1 20 43 6 29 3 33 0.87 2 12 0.21 2.2e+03 0.0 0.1 21 43 35 57 28 64 0.79 3 12 0.05 5.1e+02 2.0 0.1 25 43 66 84 55 90 0.81 4 12 0.0048 49 5.3 0.0 22 43 91 112 85 121 0.87 5 12 0.16 1.6e+03 0.5 0.0 21 43 118 140 115 145 0.80 6 12 0.023 2.3e+02 3.1 0.1 21 34 146 159 141 178 0.73 7 12 0.011 1.1e+02 4.2 0.1 25 52 206 233 200 234 0.88 8 12 0.00073 7.4 7.9 0.3 23 47 232 255 225 259 0.81 9 12 0.00019 1.9 9.8 0.2 20 44 257 281 245 285 0.87 10 12 0.041 4.2e+02 2.3 0.1 21 43 286 308 282 317 0.87 11 12 0.01 1e+02 4.2 0.3 21 47 342 368 331 373 0.81 12 12 6.3e-06 0.064 14.5 0.3 23 44 372 393 365 397 0.91
Sequence Information
- Coding Sequence
- ATGCATCAAGTGGCCCACAGCGAGAAAAAGTACACTTGTGACATATGTAACAAAAGATTCAAACGGGAGAGGACTCTGGTCGCCCACAAAAGGGGCCATACAGGTGAAAGGCCCTACAGCTGTGGCGTGTGTGACAAAAGTTACTCTCAGAAGAGCATTCTCAAGGCACATGAGAAGAAACACACTCGCAACAATCATTGTTGCGATATATGTAACAAAGTATTCACGCATAGCAAAAGTCTGGATGTCCATAAAAGGACGCATTTGGGTGACAAACCGTACAGCTGCACGATTTGCGACATGACATTCCGCCACAGCACTTCACTGAAATTGCACACCATGAACCACAGCGGCGAGAAACCGCACAGCTGTGACGTATGCGATAAGAGATTCACTCAGAAATCAGCTCTGAACGAGCACAAGATAACTCATACGGGCGAAAAACCTTACACGTGTGATATATGTGGCAACAGCTACAGCGGACGGGGGTATTTGAAGAAACACAAGAGAATCCATACGGGCGAGAAACCGTACAGGTGTGATGTGTGCGATCGACGGTTTAGCATGATCGGCATACTCAAGGAGCACATGGTCACGCATACCCGGGAAAAGCTGTACAGCTGTAGTGTCTGTGGCAAGAAGTTCTctcagaaaaaaaatgtaagggtACACGAGCGAATACATAGCGGCGCCAAACCGTACACCTGTGAGATATGCTACCGGTCCTTCTCGCACAAGAACGGACTGCGTGCACACAAACTCACCCACAGCGCGGAAAGGCCGCACACGTGTGCTGTATGCAGCAAACAGTTCAAGCAGCTCGGCAATCTGAAGCACCACGCGCGAATACATACTGGCGAGAGACCGTTCGCCTGCGaaatttgtaataaaaagttCGGCCAAGTCAGCACGCTGCACAAGCATAAAATCACACACACAAACGATAGGCCGTTCCAATGCGACCTATGTGATAAACGGTTCAGCCGACGGGGTTCCTTGGTGAAACACAATAGGACCCATACTGGCGAGAAGCCGTACTCGTGTGATATATGCCAGCAAAAGTTCACCCAGAACTCCTCGCTGCATAGCCACAGAAGAATACATACGGGCGTCAAACCGCACACCTGTGAAATATGTTATAAATCGTTTAATCAGAGTAGCTCGCTTAACAGGCATAGAAAGACGCATATTAGtaattattaa
- Protein Sequence
- MHQVAHSEKKYTCDICNKRFKRERTLVAHKRGHTGERPYSCGVCDKSYSQKSILKAHEKKHTRNNHCCDICNKVFTHSKSLDVHKRTHLGDKPYSCTICDMTFRHSTSLKLHTMNHSGEKPHSCDVCDKRFTQKSALNEHKITHTGEKPYTCDICGNSYSGRGYLKKHKRIHTGEKPYRCDVCDRRFSMIGILKEHMVTHTREKLYSCSVCGKKFSQKKNVRVHERIHSGAKPYTCEICYRSFSHKNGLRAHKLTHSAERPHTCAVCSKQFKQLGNLKHHARIHTGERPFACEICNKKFGQVSTLHKHKITHTNDRPFQCDLCDKRFSRRGSLVKHNRTHTGEKPYSCDICQQKFTQNSSLHSHRRIHTGVKPHTCEICYKSFNQSSSLNRHRKTHISNY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179169; iTF_01178856; iTF_00744951; iTF_00744955;
- 90% Identity
- iTF_01179169; iTF_01178856; iTF_00744951; iTF_00744955;
- 80% Identity
- iTF_00744955;