Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990063.1:14846997-14848370[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0042 0.47 12.1 2.8 1 23 10 32 10 32 0.97

2 16 2.6e-05 0.0029 19.1 2.3 1 23 38 60 38 60 0.94

3 16 3.7e-06 0.00041 21.8 1.9 1 23 65 87 65 87 0.99

4 16 4e-07 4.4e-05 24.8 1.1 1 23 93 115 93 115 0.98

5 16 0.00017 0.019 16.5 7.4 1 23 120 142 120 142 0.97

6 16 2.1e-05 0.0024 19.4 3.4 1 23 148 170 148 170 0.98

7 16 2.2e-06 0.00024 22.5 0.7 3 23 178 198 177 198 0.99

8 16 4.3e-05 0.0047 18.4 0.7 1 23 204 226 204 226 0.99

9 16 0.0014 0.15 13.7 0.2 1 23 232 254 232 254 0.97

10 16 2.3e-06 0.00025 22.4 1.0 1 23 260 282 260 282 0.98

11 16 1.1e-05 0.0012 20.3 2.9 1 23 288 310 288 310 0.99

12 16 3.8e-05 0.0041 18.6 3.7 1 23 316 338 316 338 0.98

13 16 1.3e-06 0.00015 23.2 1.7 1 23 344 366 344 366 0.97

14 16 1.8e-05 0.002 19.6 1.8 1 23 372 394 372 394 0.98

15 16 6.4e-06 0.0007 21.0 3.6 1 23 400 422 400 422 0.98

16 16 2.8e-07 3e-05 25.3 3.2 1 23 428 450 428 450 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0042	0.47	12.1	2.8	1	23	10	32	10	32	0.97
2	16	2.6e-05	0.0029	19.1	2.3	1	23	38	60	38	60	0.94
3	16	3.7e-06	0.00041	21.8	1.9	1	23	65	87	65	87	0.99
4	16	4e-07	4.4e-05	24.8	1.1	1	23	93	115	93	115	0.98
5	16	0.00017	0.019	16.5	7.4	1	23	120	142	120	142	0.97
6	16	2.1e-05	0.0024	19.4	3.4	1	23	148	170	148	170	0.98
7	16	2.2e-06	0.00024	22.5	0.7	3	23	178	198	177	198	0.99
8	16	4.3e-05	0.0047	18.4	0.7	1	23	204	226	204	226	0.99
9	16	0.0014	0.15	13.7	0.2	1	23	232	254	232	254	0.97
10	16	2.3e-06	0.00025	22.4	1.0	1	23	260	282	260	282	0.98
11	16	1.1e-05	0.0012	20.3	2.9	1	23	288	310	288	310	0.99
12	16	3.8e-05	0.0041	18.6	3.7	1	23	316	338	316	338	0.98
13	16	1.3e-06	0.00015	23.2	1.7	1	23	344	366	344	366	0.97
14	16	1.8e-05	0.002	19.6	1.8	1	23	372	394	372	394	0.98
15	16	6.4e-06	0.0007	21.0	3.6	1	23	400	422	400	422	0.98
16	16	2.8e-07	3e-05	25.3	3.2	1	23	428	450	428	450	0.99

Sequence Information

Coding Sequence: ATGACAATACACAGCGGTAAAAAACCTTTTAACTGTCATATTTGCGGTAAGAAATTTTTGCAGAAGGGTATTTTGAATATTCATAAACGACGACATACAGGCGAAAGACCTTACAATTGTAAGTTGTGTAATAAAACGTTTGCTCGCAATGACTGTTTGAAAATACATCAAGTGGCCCACGGCGAGAAGAAGTACACTTGTGACATATGTAGCAAGAGATTTAAACGGGAAAAGACTCTGGTCGCCCACAAAAGAAGCCATACAGGTGAAAGGCCCTACAGCTGTGGCGTGTGTGACAAAAGTTACTCTCAGAAGAGCAGTCTCAAAGCACACGAGAAGAAACACACTGGCAACAATCATTGTTGCGATATATGTAACAAAGTATTCACGCATAGCAAAAGTCTGGATGTCCATAAAAGGACGCATTTGGGTGATAAACCGTACAGCTGCACGATTTGCGACATGACATTCCGCCACAGCACTTCATTGAAATTGCACACCATGAACCACAGCGGCGAGAAACCGCACGGCTGTGACGTATGCGATAAGAGATTCACTCAGAAATCAGCTCTGAACGATCACAAGATGACACATACGGGCGAGAAACCCTACACGTGTGATATATGTGGCAACAGCTACAGCGGACGGCGGTATTTGAAGATACACAAGAGAATCCATACGGGCGAGAAACCGTACAGGTGTGATGTGTGCGATCGACGGTTTAGCATGATCGGCATACTCAAGGAGCACATGGTCACGCATACCCGGGAAAAGCTGTACAGCTGTAGTGTCTGTGGCAAGAAGTTCTCTCAGAAAAAAAGTGTGACGGTACACGAGCGAATACATAGCGGCGCCAAACCGTACACCTGTGAGATATGCTACCGGTCCTTCTCGCACAAGAACGGTCTGCGTGCACACAAACTCACCCACAGCGCGGAAAGGCCGCACAAGTGTGCTGTATGCAGCAAACAGTTCAAGCAGCTCGGCAATCTGAAGCACCATGCGCGAATACATACTGGCGAGAAACCGTTCGCCTGCAAAATTTGTGATAAAAAGTTCAGCCAAGTCAGCACGCTGCGCAAGCATAAAATCACACACACAAACGATAGGCCGTTCCAATGCGAGTTGTGTGCCAAACGGTTCAGACAACAGAGTTATTTGGTGCAACACAACAGGAGTCATACTGGCGAGAAGCGGTACTCGTGTGATATATGCCAGCAAAAGTTCACCCAGAACTCCTCACTGCATAGCCACAGAAGAATACATACGGGCGTCAAACCGTACACCTGTGAAATATGTTATAAATCGTTTAATCAGAGTAGCTCGCTTAACAGGCATAAAAAGACGCATATTAGTAATAGAGGATCGGACTGA
Protein Sequence: MTIHSGKKPFNCHICGKKFLQKGILNIHKRRHTGERPYNCKLCNKTFARNDCLKIHQVAHGEKKYTCDICSKRFKREKTLVAHKRSHTGERPYSCGVCDKSYSQKSSLKAHEKKHTGNNHCCDICNKVFTHSKSLDVHKRTHLGDKPYSCTICDMTFRHSTSLKLHTMNHSGEKPHGCDVCDKRFTQKSALNDHKMTHTGEKPYTCDICGNSYSGRRYLKIHKRIHTGEKPYRCDVCDRRFSMIGILKEHMVTHTREKLYSCSVCGKKFSQKKSVTVHERIHSGAKPYTCEICYRSFSHKNGLRAHKLTHSAERPHKCAVCSKQFKQLGNLKHHARIHTGEKPFACKICDKKFSQVSTLRKHKITHTNDRPFQCELCAKRFRQQSYLVQHNRSHTGEKRYSCDICQQKFTQNSSLHSHRRIHTGVKPYTCEICYKSFNQSSSLNRHKKTHISNRGSD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00745288;
90% Identity: iTF_00745288;
80% Identity: -