Pari038472.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- -
- Assembly
- GCA_963565745.1
- Location
- OY751453.1:2356950-2358152[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 3.7e+03 -0.6 0.1 21 31 7 17 4 30 0.78 2 13 0.046 9.9e+02 1.2 0.1 21 43 35 57 25 64 0.78 3 13 0.017 3.7e+02 2.6 0.1 24 43 65 84 54 91 0.80 4 13 0.0043 92 4.5 0.0 22 44 91 113 85 122 0.86 5 13 0.11 2.4e+03 -0.0 0.1 22 43 119 140 115 144 0.80 6 13 0.0067 1.4e+02 3.9 0.1 19 34 144 159 129 178 0.74 7 13 0.29 6.3e+03 -1.4 0.1 20 30 173 183 160 187 0.78 8 13 0.011 2.3e+02 3.2 0.0 25 52 206 233 200 234 0.85 9 13 0.00048 10 7.5 0.3 22 43 231 252 225 257 0.85 10 13 6.9e-05 1.5 10.2 0.1 21 52 258 289 253 291 0.87 11 13 0.0044 95 4.5 0.0 21 43 286 308 281 318 0.90 12 13 0.0051 1.1e+02 4.3 0.3 21 47 342 368 331 373 0.81 13 13 3.1e-06 0.068 14.5 0.3 23 44 372 393 365 397 0.91
Sequence Information
- Coding Sequence
- ATGCATCAAGTGGCCCACGCTGAGAAAAAGTACACTTGTGACATATGTAGCAAAAGATTCAAACGGGAATGGACTCTGGTCGCCCACAAACGGGCCCATTCAGGTGAAAAGCCCTACAGCTGTGGCGTGTGTGACAAAAGTTACTCTCAGAAGTCCGTTCTCAAGGCACACGAAAAGGCACATACTCGCAACAACCACTGTTGCGATATATGTAATAAAGTATTCACGAATAGCAAAAGACTGGAGGTCCATAAAAGGACACATTTAGGTGACAAACCTTATAGCTGCACGATTTGCGACATGAAATTTCGCCACAGCACTTCACTAAAATTGCACACCATGAACCACATCGGCGAGAAACCGCACAGCTGTGACGTATGCGACAAGAGATTCAGTCAGAAGTCAGCTCTGAACGAGCACAGGATAACACATACAGGCGAGAAACCCTACACGTGTGACATATGTGGCAACAGCTACAGCGGACGGGGGTATTTGAAGAAACACAAGAGAATCCATACGGGCGAGAAACCGTACAGTTGTGAAGTGTGCAATCGACGGTTTACCATGATCGGCATACTCAAGGAGCACATGATCACACATACCGGGGAAAAGCTGTACAGCTGTAGTGTCTGTGGCAAGAAGTTCgctcagaaaaaaaatgtgAGGGTACACGAGCGAACTCATAACGGCGCCAAACCGTACACCTGTGAGATATGCTACCGGTCCTTCTCTCACAACAATGGGCTACGTGCACACAAACTCACTCACAGCACTGAAAGGCCGCACACCTGTGTTGTATGCAGCAAACAGTTCAAGCAGCTCGGCAATCTGAAGCACCATGCGCGAATACATACAGGCGAGAAACCGTTCGTCTGTGaaatttgtgataaaaagttcAGCCAACTCAGCACACTGCGCAAGCATAGAATCACGCACACAAACGATAGGCCGTTCCAATGCGAGTTATGTGATAAACGTTTCAGTCGACGGGGTTCTTTGGTGAAACACAACAGGACTCATACTGGCGAGAAGCCGTACTCATGTGATATATGCCAGCAAAAGTTTACCCAGAATTCCTCACTGCATAGCCACAGAAGAATACATACGGGTGTCAAACCGCACACCTGTGAAATATGTTATAAATCGTTTAATCAGAGTAGCTCGCTTAACAGGCATAGAAAGACGCATATTAgtaattattaa
- Protein Sequence
- MHQVAHAEKKYTCDICSKRFKREWTLVAHKRAHSGEKPYSCGVCDKSYSQKSVLKAHEKAHTRNNHCCDICNKVFTNSKRLEVHKRTHLGDKPYSCTICDMKFRHSTSLKLHTMNHIGEKPHSCDVCDKRFSQKSALNEHRITHTGEKPYTCDICGNSYSGRGYLKKHKRIHTGEKPYSCEVCNRRFTMIGILKEHMITHTGEKLYSCSVCGKKFAQKKNVRVHERTHNGAKPYTCEICYRSFSHNNGLRAHKLTHSTERPHTCVVCSKQFKQLGNLKHHARIHTGEKPFVCEICDKKFSQLSTLRKHRITHTNDRPFQCELCDKRFSRRGSLVKHNRTHTGEKPYSCDICQQKFTQNSSLHSHRRIHTGVKPHTCEICYKSFNQSSSLNRHRKTHISNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745288;
- 90% Identity
- iTF_00745288;
- 80% Identity
- iTF_01178856;