Gale018406.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990050.1:22674579-22685977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 3.7e-06 0.00041 21.8 1.2 1 23 204 226 204 226 0.98 2 30 0.0011 0.12 14.0 1.0 2 21 315 334 314 335 0.92 3 30 0.00057 0.062 14.9 0.2 2 23 361 383 360 383 0.96 4 30 0.0025 0.27 12.9 0.5 1 23 433 455 433 455 0.97 5 30 0.038 4.2 9.2 0.4 1 23 476 498 476 498 0.98 6 30 0.0016 0.17 13.5 0.8 3 23 539 560 539 560 0.96 7 30 0.002 0.22 13.2 4.1 2 23 617 639 617 639 0.97 8 30 0.00028 0.03 15.9 1.8 1 23 689 712 689 712 0.97 9 30 0.00081 0.089 14.4 0.5 2 23 769 790 768 790 0.96 10 30 0.004 0.44 12.2 5.6 2 23 802 823 801 823 0.97 11 30 0.04 4.4 9.1 1.5 2 23 835 856 834 856 0.96 12 30 0.013 1.5 10.6 1.7 1 23 866 888 866 888 0.98 13 30 0.002 0.22 13.2 4.5 2 23 918 939 918 939 0.96 14 30 0.00033 0.036 15.7 2.0 1 23 950 972 950 972 0.98 15 30 0.017 1.8 10.3 3.1 1 23 980 1002 980 1002 0.97 16 30 0.0008 0.088 14.4 0.2 2 23 1022 1044 1021 1044 0.97 17 30 0.86 95 4.9 0.3 1 23 1062 1084 1062 1084 0.91 18 30 0.14 16 7.4 3.7 1 23 1091 1113 1091 1113 0.97 19 30 0.00079 0.086 14.4 2.8 2 23 1124 1146 1123 1146 0.95 20 30 0.041 4.5 9.1 0.2 2 23 1169 1190 1168 1190 0.94 21 30 0.34 37 6.2 0.4 2 20 1194 1212 1193 1213 0.93 22 30 0.0022 0.24 13.0 0.2 2 23 1271 1292 1270 1292 0.95 23 30 9.3 1e+03 1.6 2.8 5 23 1302 1320 1299 1320 0.92 24 30 0.014 1.5 10.5 0.4 2 23 1331 1353 1330 1353 0.95 25 30 0.1 11 7.8 2.5 2 23 1370 1388 1370 1388 0.94 26 30 1.9 2e+02 3.8 1.4 2 20 1392 1410 1392 1412 0.89 27 30 1.3 1.4e+02 4.3 2.6 2 23 1462 1483 1461 1483 0.93 28 30 0.0094 1 11.1 0.1 2 23 1494 1516 1493 1516 0.94 29 30 7.2 7.9e+02 2.0 0.4 3 23 1533 1550 1532 1550 0.77 30 30 6.9 7.5e+02 2.0 3.5 1 19 1553 1571 1553 1573 0.89
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTCGGAAAATGTAGACTTTGTCTCAAACTTGGAGATTTTTGCTCCATCTTCACCACGGATAACAATGTTCAACTTGCTGAAATGGTTATGGAATGTGCTCGAGTAAAAATATATGATGGAGATGGACTACCAGATAAAATATGTAATGAGTGCATACAGAAACTCAGCGGTGCTCACATTTTCAAACAACAGTGTGAGCGCTCTGACCAGGAATTGCGACGAAACTATGTGCCGCCGCCAGGATTTAGTATATCACCACCTCCACCGACTCCGCCGAATAGACAAAGCAGCGATTCAGCGTTCTCTTCACTCGCTACCGAAGTATCAAAAGAGGGTTTTGCAACCGCAAGAGCAAACACTAGCGCGTCTTCCGTGGAGAGCAAAGTGAAAGTAGTTCCTAGAGGTCGCAAACGAAGCGGAGACAGCATTGACGACGCATCTGTGAGCAGTCggtcacatgactatcgaggtGTCACCAAACGCGTCGACGAATTGCGAACGACCCACAAGAAGGGCAGATACACATCCGATTCTGATTATGAGGATAACAGCGCATTttactcggccgaaaccgattCCGATGACATTCCGACTGATTACAAATGCAAGGAATGTCCAAAATCTTTTAAAAGTCAAAAAAGTTTGAATGGACATGCTAAGGTGCATAAGAGGAAAATTTACAATCAAGGAAATGTTTCTCAAGGAAATGTTTCTAAAGGAAATGTTTCTCAAGGAAATGTTTCTCAAGGAAATGTTTCTCAAGGAAATGTTTCTCAAGAAAATATTTCTCAAGGAAATGTTTCTTACGAAAATGACACCGACTTGGACACGACTAATAATAGTGCCGCCGATACCAGTGCTCATAAATTGAATTCAACTATCGAGACCTCAAAAACCTTCGATGACGCAATGGACGTAGAGGACAAGCTTTCGTGTGACAAATGTAACAAAACATTCAAATTAAAGATTATGCTGAAGCGCCACTACGAAACATGCGGCAAAACACCAACGAAGATGTTGCAAGTCGCTTTGGAACCGTTAGATTTGCCGACGCCTAGTGGCGCGATCACTTGCAAGATGTGCAATGGCCTTTTTAAGACTGTAGATAATCTCGCAAAGCACATGAGAGTCGTTCACGCGGCTGTATTACAAAAAGACGAGGTATTAGAAAATCAGGTTGAAACAGTTAATGTCccttgtattttttgtcaagaATCATACAACGATTTCCACGTCTACAAATCGCACCTGGACGAATGTCCCGAAAGGCGAAACTTGCAGAGTTTTGACTGCCCGCTTTGCCAGCGTCCGTTATCAAGGCGACACGCGTACGTCGCCCATATTAAGTCCCACTTTTTCCCGACAACGAATACGAGGTTCCCCAACACACCGCAAAAGCAAGAAACGCCTACCTTTAAATGTCGTTTTTGCAGTCTTACGTTACCCAGTCAAGAACTATTGATAATTCATTTGTCCAAGCACATGTCAAATATGGACGATCCGAATGAAGCTGGCGACGAAGAATCGAGGCCAAGTACTGTTGAAGATTCAGCTTCCGTGCATTCCGAATACAGTGGAAGTGCGCCAAATGGAAAGTTGGGCTGCCGCTACTGTGGCAAACAATTCACATACGAAAAATCTTTAGCTACTCACATCGTTAAAAATCATCCGCCGGGTTCGGAGATTAAAGGCGAGCCGCCGGACAAAAACGCCTCCACAGATTTGCTCAGTGAGACGAACCAGAGCTTGAACAACACGGGGATGACCGAAGGTATGAACGAGACGGGGATGACGGACTCGGAGTCCAGCCACGACGAGGAGGGCGAGGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGCCGCCTTCTGCTGCACCACAAGCGCACCAAGCACAATATGTCGTCCGGCACCAAGCGCGCCAAGATCACGCTCAAGGACTGCATGGTGCGCTGCCTCATCTGTGACGTCGAGATGAAAGTGAGCGACATCAACGAGCACAACCAAACGCACATCTCTGTCAACATCAAGCCGCGGAACCTGTACACTTGCACGCTATGCACCATGACGTTCAAAAGCTGCAGTGGCCTGGCGAACCATATCAAGCTCGTGCACAGATTGAAGCAGCAGGCGCCGAAATTAGATATGTCCGCCCCGAATCCGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAGCCCCTGGACGAAGTTCAGGGTCACAACGGCTTATCCGAGGCCGCCGCCACCGAAACGATACCTTTGGTGAACATGCAGGGGTTGACTTGCCATATCTGCGGCAAGCAGCTGCCGACGCTCATCTCGCTCAAGAGACACGTCAACTGGCACAAGAATGTCGGCAACAACATCGAGAAGCCGATGGAATGCTTCGTTTGTAACGAGACATTCAGATTCCAGTGTCACTACAAGATGCACATGCGCGTACATTATCACGACACCAACATAGACCCCAAGCACCTCACCTGCCCCATCTGCAACCGCAAGAGCAAGCATCTGCGCGCCGCCCAGATGCACATGAACTACCACAAGCAGACCCGATTCAAAAATAAAGACTACGAGTGTTCCATTTGTAAACGAATCTTCCAACACCGCAAGGTTTATCTCTCACACATGGCCGTCCATTTCAAAAAGGGCGACAGCGCCACCAACACTATCGTCGGTTCCGTGCTCCCCAACAATGCAGATAAAACTGCCTTCGACGGCACTAACACCTGCCACCTCTGCGGAAAGGTCTGTGACTCCGAGAGCTCGCTCAAACACCATCTGATTTGGCATAAATCTAAAACCTTGCTGTACGGCGCGAGGCACGAGTGCGATATTTGCACTGTAGTTTTTACTAACAAGAGACGCCTGGAACTTCATTACCGAACGCATTTCGAGGACGATAATGGTCCATTCAAGTGCCATATTTGCGGCAAAGGATACATAGTGGAAGATTATTGTAAGAAGCACATTAAAGGACACAACTTCGATCATCAGTCGCATAAAAAGCGCATCGATAAACTGAGAAAGGATAAGGTGAAATGTCCTATTTGCTCGCGGTACTATCCGGACCTGGTTAAGCTCATCCGCCACTTGCGGCGAACGCACCCAGAGAGCAAAATGATAAAAGAGGATCCAGACGCTCCCCCGCCCATGTACTACTCGTGCAAACTGTGCGCTAAGGTATTCCTGGACGAGAGAAGACTGCAAAATCACGAGGAAGCCCATCTAAGGAAACCCGAATTTTTCAAGTGTAAATTTTGCGGAAAGAAAACTATATCACTAAAGAATCACAGGATTCACATAAAAGGACATTTGACCCAAAAGTATATCGACGACCCATTGAAGTGCCCTCACTGCGACGAGACATTCAATAGGGGATATGACTTGCACTATCATCTTCGCGACACTCACGACATCGTCGAAACTTGGATCGCCGAACGCGGCACCCAAATCCTGGACGGTCCTCTAAAAGAACTCCAATGTTCTGTTTGCTACAAAGTTTTGGCCAGCAAGGGCAACTACGATAGGCATGTCGACTATCATAACTCTCTGCGATGTAACTACTGCTTCGAATACTTTAACACCTCACGATTCCTGGAAGGTCATCTCGCTTTTAGCTGCGAGAAAAAGAAGCTCATAGGGGATACCGAGGTTTATCCGAGGAAAATTAAGTGTGAAATGTGCTTCAAAGCTTTCCATCTGCAAGTCAAATTGGATTGTCATCTTAGGATCAAACACGACATTAGAGTCTTCAAAGAAAAGTCGGCCGGGAAGAGGGAGATCGTTTGCGACTACTGTTTCAAAGTATTCGAAAACGAGTACGCCCTGAGTAATCACAAAATCTATCATCGCACTATCGGCTACTACGGTTGCATCTATTGCGCCagaaaattcaacactttgacCGCGTACAGAAAACATAAAACTCATCATTTCTCTCAGCTGCACGTCGACGACCCAGTGAAATGCGAGCACTGCGACGAAACGTTCGTCGCATTCCGTGAGATGATATACCACATGCGTGACGCGCACGGCGACGACAAGGAGTGGATCGTGGAACCGAAACAATCCATCGAGGAAAAGTGCCCCATTtgcgataaaatatttttcaatcttCACAGACACATGGACTACCACGAAGAAAATAGATGCAAGAAGTGCGGCGAATacttctattccaccttagactTTGACAATCATCTGTGCGCGATCGATTCGGACGAGGAAGTCAATGAAAATAGTAACGTCACAGATCTGAGACCGAAATATGAGGAGTGTGATTTCTGTTTCAAACCGACCACCAGGAAAAATTCCAAGAAGTTGCATGACAATATGCACAGAGGGTCCGGGGCTATATCCTGCCGCTTCTGTTcccataaattcaaaactatgGACGCATTCAATATACACGCTTTCTCGCACAGAAGCAGAAAATACAAGTTGAAACCGATCAGATGTAAGATGTGCCCCGAAGCGTTCGTCAAATACGGTCCGTTCATGAAGCACATGAAGGATGTGCACAAAAGTTTGAAGAAAATGCATTACCGGGCGAAAGTGAAGGCCGAGCCGTGCGTCGTTTGCGGCCAGGACTTCCCTAACCTGCACAACCACTACCGCGCACATCTGGACCACAAGTGCCCGTCCTGCCGCAAGTACTTCATCTCGAGTCGCGCGTTCGGTCTGCACAAGTGCGACGAGGAGGACCCGGACCCGACCAAGGTGTTCACCTGCGACGCCGACCTCAACCGGCTCATCAACGAGTACGTTCCCAAAGACGAGAAGGACGACGAGAAATACTACGGCTACGACGACGCCGACGAGGTGGCGCCGGAGCCGGAGCCCGCGCGGCCACCAAAACCGCGTGGACGGCCACCGAAACCACTCGGACATCCGGTAAAACTGTCACGACGGCCGCTTGGACCTAAAACTTATAAAAACCCAAAACTAGTGAAACAGGTCTGGCAAAGCCTGGGCAAGTCTCTCACGAAGACCAGCCAAACTTCGCAGGACGAGGACAGCCAAAACTCCATTGATCCAGACGAGGGAGAACTGCACGAGATGGTCCACGCTCCCATCATCTCCGATGTGCTGTCGCTGTATCAGAAAAATGAAAAGAAAAAGGCCAAAAACAACGACGACGACGAGGACAGCGATGTCGTTCTGTTATCTGACGATGATTCCAACGGAGTCGAAAAAGTTATACCTCTTGTGGTcgtagatgatgatgattga
- Protein Sequence
- MALKLGKCRLCLKLGDFCSIFTTDNNVQLAEMVMECARVKIYDGDGLPDKICNECIQKLSGAHIFKQQCERSDQELRRNYVPPPGFSISPPPPTPPNRQSSDSAFSSLATEVSKEGFATARANTSASSVESKVKVVPRGRKRSGDSIDDASVSSRSHDYRGVTKRVDELRTTHKKGRYTSDSDYEDNSAFYSAETDSDDIPTDYKCKECPKSFKSQKSLNGHAKVHKRKIYNQGNVSQGNVSKGNVSQGNVSQGNVSQGNVSQENISQGNVSYENDTDLDTTNNSAADTSAHKLNSTIETSKTFDDAMDVEDKLSCDKCNKTFKLKIMLKRHYETCGKTPTKMLQVALEPLDLPTPSGAITCKMCNGLFKTVDNLAKHMRVVHAAVLQKDEVLENQVETVNVPCIFCQESYNDFHVYKSHLDECPERRNLQSFDCPLCQRPLSRRHAYVAHIKSHFFPTTNTRFPNTPQKQETPTFKCRFCSLTLPSQELLIIHLSKHMSNMDDPNEAGDEESRPSTVEDSASVHSEYSGSAPNGKLGCRYCGKQFTYEKSLATHIVKNHPPGSEIKGEPPDKNASTDLLSETNQSLNNTGMTEGMNETGMTDSESSHDEEGEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGTKRAKITLKDCMVRCLICDVEMKVSDINEHNQTHISVNIKPRNLYTCTLCTMTFKSCSGLANHIKLVHRLKQQAPKLDMSAPNPADFCEVVVTKAEPLDEVQGHNGLSEAAATETIPLVNMQGLTCHICGKQLPTLISLKRHVNWHKNVGNNIEKPMECFVCNETFRFQCHYKMHMRVHYHDTNIDPKHLTCPICNRKSKHLRAAQMHMNYHKQTRFKNKDYECSICKRIFQHRKVYLSHMAVHFKKGDSATNTIVGSVLPNNADKTAFDGTNTCHLCGKVCDSESSLKHHLIWHKSKTLLYGARHECDICTVVFTNKRRLELHYRTHFEDDNGPFKCHICGKGYIVEDYCKKHIKGHNFDHQSHKKRIDKLRKDKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPMYYSCKLCAKVFLDERRLQNHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYIDDPLKCPHCDETFNRGYDLHYHLRDTHDIVETWIAERGTQILDGPLKELQCSVCYKVLASKGNYDRHVDYHNSLRCNYCFEYFNTSRFLEGHLAFSCEKKKLIGDTEVYPRKIKCEMCFKAFHLQVKLDCHLRIKHDIRVFKEKSAGKREIVCDYCFKVFENEYALSNHKIYHRTIGYYGCIYCARKFNTLTAYRKHKTHHFSQLHVDDPVKCEHCDETFVAFREMIYHMRDAHGDDKEWIVEPKQSIEEKCPICDKIFFNLHRHMDYHEENRCKKCGEYFYSTLDFDNHLCAIDSDEEVNENSNVTDLRPKYEECDFCFKPTTRKNSKKLHDNMHRGSGAISCRFCSHKFKTMDAFNIHAFSHRSRKYKLKPIRCKMCPEAFVKYGPFMKHMKDVHKSLKKMHYRAKVKAEPCVVCGQDFPNLHNHYRAHLDHKCPSCRKYFISSRAFGLHKCDEEDPDPTKVFTCDADLNRLINEYVPKDEKDDEKYYGYDDADEVAPEPEPARPPKPRGRPPKPLGHPVKLSRRPLGPKTYKNPKLVKQVWQSLGKSLTKTSQTSQDEDSQNSIDPDEGELHEMVHAPIISDVLSLYQKNEKKKAKNNDDDEDSDVVLLSDDDSNGVEKVIPLVVVDDDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406086; iTF_00164584; iTF_00404033; iTF_00289032; iTF_01248401; iTF_01217685; iTF_00934053; iTF_00935018;
- 90% Identity
- -
- 80% Identity
- -