Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990043.1:13243896-13246466[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-10 8.9e-08 32.9 0.0 5 40 1 36 1 40 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-10	8.9e-08	32.9	0.0	5	40	1	36	1	40	0.89

Sequence Information

Coding Sequence: ATGCAAGCTGCTATCACTGCAGTGCGAGAGGGACGGTTCAAAATCAGAGAAGCTGCACGTCATTTCGGCGTGCCCCATAGCACTCTGATAAATAAAGTAAAAGGCAGAGTTCCAGGAGTAAGAAAAATGGGACGTGATACGTATTTTACAGAAAATGAAGAAAATCTTCTAGTGAAATATATCATTGCAAGTGCTAAGAAGGGCATACCGATAAAAAGAAATACCTTGATAGAAAcggtgaaaaaaatattagatgaCGACGAGAGAGTGACGCCATTCAAAAATAATCGGCCAGGCAAGAAATGGGTCACGTTATTTTGCAATCGACACCCGGAAATAACTGAAAAACAAGCTGAAGGGATATCCACAGCACGAGCTAATGTATCTGAAAACGACATCAAAAGCTGGCACCAATCCCTTAAAGAGTACTTAGCCGAAGAAAATGCTTTGGATATATTGGAAGAGCCCAAACGCATATTTAATGCAGACGAATCAGGTTTCCAGACATGTCCAGAGTCAGGCAAAGTGCTAGGGCCAGTTGGCATGAAAAACTTCTACCAAATAAAAGCTGGAAAAGAGAAGGAACAACTGACTGTTATGGTCACTATCAATGCTGCAGGTCAAATAGTTACGCCAATGATCGTTTACCCCCTAGTTCGTATTTCAAAAGAAATATCAACAAATGTTCCGGAAAACTGGGGGATAGGCAAATCTCCGAAAGTTTGGATGACCGGACCTTTATACTTCGAATACATTGCTAATATTCTAGATCCATGGGTGAAGACGAACAACATAAAGAAACCTATTTTGCTCCTAATAGATGGGCATCGCTCTCACTTGACGTTACAAGTATCGCAGTACTGTGCTGAAAATCAAATTATAGCCTACGCTCTCTTTCCCAACTCAACGCACATTTCTCAACCGGCGGACGTATCCGTCTTCAAATGTATGAAAAGTGGCTGGAAAAATACCGTTTGCGAATTCAAAGAAAGAACTGGGAATAGGCAGATTACACGTGCTGGATTCGCAACCTTGCTCGCTAAAGTTATTAAAGAAAAAGTCACTCCAGATGTCATTTCAAATGGTTTTAAAAGATGTGGGATCTATCCATTTGACGTCACTGCTGTAGATTTTACAAGGTGCATGGATAATGAAAGTAGAAAAATTGCACCTGTGTCAACTCCACCACGTGAGATCGGAGTGGAGACACTGTTGCTGTTTGAGTCTTTTATGAGACGAGGCCGTATTGAGCAATTTAGACGGAGTAATGAACAGTGGGAAGGGGAGGAAACCGCCAAGGAATTGTTCTATGTGTGGAAAAAGTTTCGTCAGCATTGTTTGTCGGAGACTTTCCCGTCCAGTGCAGATGTCAGATCACCATCACCACAGAACCATATCACTCTGCCGGTAAAAATGAAAATTCCCACAACGTGCAGTACACCAGTCTCGAAGACGTCATTTCTACCAGAACAGTTCAAAACTTCCTCAAGATGTAGTACTCCGGTTTCAATGGTACCCGATCTTCAAGAAGAGTCCGAAGCTTCCACCAGATGTAGTACTCCGACTTCTATTGCTACATTTTTTCCAGAACTGGCAGAAACTCCGACCAGACGTTGTTCTCCGGTTTCAAACGCACATTTTCTAGAGGAGTCCGAAATTCCTACCCGATCTTGTACTCCAGTCTCAAAGACACTACATATTTCAGAGAAGTCCGGAACTCCAACTCAGATCTTGAAGTCACCTAATTACCGTTTTAAATGCCATACTCCAATAATCCAAACTGATAAAATTGGTGCTATGACACCCCCAGTAGctaaaaacaaaacatttacTTCATCGAGCAATCTTCTTCTCTTGGCTGAGAAACAAAAACAGGTCAGTCCTGCTTTTGGAAACCATTTAATATGGCCCTCAGATTCTCCGATAAAAAAACCCAAAAAAGAAAGACTGCCATTCGCCACCACTTCTAAAAAATGGCAAGATTATTGGCTGACGAAAGAAAATGAAAAAGACGAACAAAACAGAAAAACAGAAATCAGAAAACGTGTACGAGAAGAAAAGAATATCAAGAAAAGTAAACAAATacctaaaaaaataacaaaaaaagaaattaaaggCGAGTTGGCCAGCAAAACAAtcaacaaaaaaaagaaaagagttCGAATAATTACAAGCGACACCAGTGATACCAGTGAAGCGATATCAGATAAGGAACAAGAACAGAGGATAGAACAACACATAAACGATGATAAAGCAGAATCTGAGAAAGAAAACGAGGAAGAGGCATCTTGTGCTAGTGTGGATTTAAAAAGTTTGGATGTGGGACATTTTGTAATATTTGTTTATGAAGGGGCATACTTTGTTGGCAAAATCGATTCAGTTTCTGAAGAAGGAGCATTGATCAATTCAATGCATCAGTCGCTCAAAAGTTGGAAGTGGCCAGAGAAAGAGGACTTGATTTTATATCGACTCGacgatattaaggaaaaaaTTCAACCTCCACAACTAATACACCAAAAACGGGGACTTTATCACGTTCCCGAATTTGAAAAATATAGagaatatatttaa
Protein Sequence: MQAAITAVREGRFKIREAARHFGVPHSTLINKVKGRVPGVRKMGRDTYFTENEENLLVKYIIASAKKGIPIKRNTLIETVKKILDDDERVTPFKNNRPGKKWVTLFCNRHPEITEKQAEGISTARANVSENDIKSWHQSLKEYLAEENALDILEEPKRIFNADESGFQTCPESGKVLGPVGMKNFYQIKAGKEKEQLTVMVTINAAGQIVTPMIVYPLVRISKEISTNVPENWGIGKSPKVWMTGPLYFEYIANILDPWVKTNNIKKPILLLIDGHRSHLTLQVSQYCAENQIIAYALFPNSTHISQPADVSVFKCMKSGWKNTVCEFKERTGNRQITRAGFATLLAKVIKEKVTPDVISNGFKRCGIYPFDVTAVDFTRCMDNESRKIAPVSTPPREIGVETLLLFESFMRRGRIEQFRRSNEQWEGEETAKELFYVWKKFRQHCLSETFPSSADVRSPSPQNHITLPVKMKIPTTCSTPVSKTSFLPEQFKTSSRCSTPVSMVPDLQEESEASTRCSTPTSIATFFPELAETPTRRCSPVSNAHFLEESEIPTRSCTPVSKTLHISEKSGTPTQILKSPNYRFKCHTPIIQTDKIGAMTPPVAKNKTFTSSSNLLLLAEKQKQVSPAFGNHLIWPSDSPIKKPKKERLPFATTSKKWQDYWLTKENEKDEQNRKTEIRKRVREEKNIKKSKQIPKKITKKEIKGELASKTINKKKKRVRIITSDTSDTSEAISDKEQEQRIEQHINDDKAESEKENEEEASCASVDLKSLDVGHFVIFVYEGAYFVGKIDSVSEEGALINSMHQSLKSWKWPEKEDLILYRLDDIKEKIQPPQLIHQKRGLYHVPEFEKYREYI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01091703;
90% Identity: iTF_01091677; iTF_00352993; iTF_00695425; iTF_01091705; iTF_01091706; iTF_00695420; iTF_01091710; iTF_01091711; iTF_01091712; iTF_00744542;
80% Identity: -