Carc027359.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
JAWDAA010000029.1:3045471-3047948[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-10 1.4e-07 31.9 0.0 5 40 1 36 1 39 0.92

Sequence Information

Coding Sequence
ATGCAAGCTGCTATCACTGCAGTGCGAGAGGGACGGTTCAAAATCAGAGAAGCTGCACGACATTTCGGCGTGCCCCATAGCACtctgataaataaattaaaaggcaGAGTTCCAGGAGTAAGAAAAATGGGACGTGATACGTATTTTACAGAAAACGAAGAAAATCTTCTAGTGAAATATATCATTGCGAGTGCTAAGAAGGGAATACCGATAAAAAGAAATACCTTAATAGAAACGGTGAAGAAAATATTAGATGACGACGAGAGAGTGACGCCATTCAAAAATAATCGGCCAGGCAAAAAATGGGTCACGTTATTTTGCAATCGACACCCGGAAATAACTGAGAAACAGGCTGAAGGGATCTCCACAGCACGAGCTAATGTATCTGAAAAAGACATCAAAAGTTGGCACCAATCACTTAAAGAGTATTTAGTCGAAGAAAATGCTTTGGATATATTGGAAGAGCCCAAACGCATATTTAATGCAGACGAATCAGGTTTCCAGACATGCCCAGAGTCTGGCAAAGTTCTAGGGCCAGTTGGCATGAAAAACTTCTACCAAATAAAAGCTGGAAAAGAGAAAGAGCAACTGACTGTTATGGTCACTATCAATGCTGCAGGTCAAGTAGTTACGCCCATGATCGTTTACCCCCTAGTTCGCATTTCAAAAGAAATAGCAACAAATGTTCCGGAAAACTGGGGGATAGGCAAATCTCCCAAAGGTTGGATGACCGGACCTTTATACTACGAATACATTGCTAATATTCTAGATCCATGGGTGAAGGCGAACAACATAAAGAAACCTATTTTGCTCCTAATCGATGGGCATCGTTCTCACTTGACGTTACAAGTATCGCAGTACTGTGCTGAAAATCAAATTATAGCCTACGCTCTCTTTCCCAACTCAACGCACATTTCTCAGCCAGCGGACGTATCCGTATTCAAATGTATGAAAAGTGGCTGGAAAAATACCGTTTGCGAGTTCAAAGAAAGAACTGGGAATAGACAGATTACCCGTGCTGGATTCGCACCCTTGCTCGCCAAAGTTTTTAAAGACAAAGTCACTCCAGATGTCATTAAGAATGGTTTTAAAAGATGTGGGATCTATCCATTTGACGTCACTGCTGTAGATTTGACAAGGTGCATGGATAATGAAACTAGAAAAATTGCACCCGTGTCAACTCCACCACGTGAGATCAGAGTGGAGACACTCTTGCTGTTTGAGTCTTTTATGAGACGAGGCCTTGTTGAACAATTTAGACGGAGTAATGAACAGTGGGAAGGGGAGGAAACCGCCAAGGAATTATTCTATGTGTGGAAAAAGTTTCGTCAGCACTGTTTGTCGGAGGGTTTCCCGTCCAGTGCAGAAGATGTTAGATTACCATCACCACAGAACCAGATCACTCTGCCGGTAGAAACGAAAATTCCCACAACGTGCAGTACACTAGTCTCGAAGACATCATTTCTACCAGAAGAGTTCAAGACTTCCTCAAGATGTAATACGCCGGTTTCAGTGTCACCACATCTTCAAGAAGAGTCCGAAGCTTCCACCAGATGTAGTACTCCGATATCTGAAACACATTTTTTTCCAGAACCGGCAGAAACTCCGACCAGAATTTGTACTCCGGTTTCGAACGCACATCTTCCAGAGGAGTCCGAAACTACCACCCGATCTTGTACTCCAGTCTCAAAGACACTACATATTTCAGAGAAGTCCGGAACTCCAACTCAGATCTTGAAGTCACCTAATAACAGTTTTGAATGCCATACTCCAATAATCCAAACTGATAACATTGGTGTTATGACCCCCCCAGCAGCTGAAAAGAAATCATTAACTTCATCGAGCAATCTTCTTCTCTTAGCTGAGAAACAAAAACAAGTCAGTCCTGCTTTTGGAAACCATTTAATATGGCCCTCAGATTCTCCgataaaaaaacctaaaaaagaAAGACTGCCATTCGCCACCACTTCTAAAAAATGGCAAGATTATTGGCTGtggaaagaaaatgaaaaagacGAACAAAATAGAAAAACAGGAAACAGAAAACGTGTACgagaagaaaagaaaatcaataaaagtaaacaaatacctaaaaaaaccacaaaaaaagaaattaaaggCGAGATGACCACTAaaataaccaacaaaaaaaagaaaagagtcCGAATCATTACAAGTGATACCAGTGATTCCAGTGAAGCGGTATCAGATGAGGAACCAGAACAGAGGATAGAAAAACACATAACCGATGATAAAACAGAATCTGAGAAAGAAAACAAGGAAGAGGCATCTTGTGCTAGTGTGGATTTAAATAGTTTGGAGGTGGGacattttgtaatatttgtttATGAAGGTGCATACTTTGTTGGCAAAATCGATTCAATTTGTGAAGAGGGAGCATTGATTAATTCAATGCATCAGTCGCTCAAAAGTTGGAAGTGGCCAGAGAAAGAGGCCAATTTTATACAAACTCGATGA
Protein Sequence
MQAAITAVREGRFKIREAARHFGVPHSTLINKLKGRVPGVRKMGRDTYFTENEENLLVKYIIASAKKGIPIKRNTLIETVKKILDDDERVTPFKNNRPGKKWVTLFCNRHPEITEKQAEGISTARANVSEKDIKSWHQSLKEYLVEENALDILEEPKRIFNADESGFQTCPESGKVLGPVGMKNFYQIKAGKEKEQLTVMVTINAAGQVVTPMIVYPLVRISKEIATNVPENWGIGKSPKGWMTGPLYYEYIANILDPWVKANNIKKPILLLIDGHRSHLTLQVSQYCAENQIIAYALFPNSTHISQPADVSVFKCMKSGWKNTVCEFKERTGNRQITRAGFAPLLAKVFKDKVTPDVIKNGFKRCGIYPFDVTAVDLTRCMDNETRKIAPVSTPPREIRVETLLLFESFMRRGLVEQFRRSNEQWEGEETAKELFYVWKKFRQHCLSEGFPSSAEDVRLPSPQNQITLPVETKIPTTCSTLVSKTSFLPEEFKTSSRCNTPVSVSPHLQEESEASTRCSTPISETHFFPEPAETPTRICTPVSNAHLPEESETTTRSCTPVSKTLHISEKSGTPTQILKSPNNSFECHTPIIQTDNIGVMTPPAAEKKSLTSSSNLLLLAEKQKQVSPAFGNHLIWPSDSPIKKPKKERLPFATTSKKWQDYWLWKENEKDEQNRKTGNRKRVREEKKINKSKQIPKKTTKKEIKGEMTTKITNKKKKRVRIITSDTSDSSEAVSDEEPEQRIEKHITDDKTESEKENKEEASCASVDLNSLEVGHFVIFVYEGAYFVGKIDSICEEGALINSMHQSLKSWKWPEKEANFIQTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01091703;
90% Identity
iTF_00744544;
80% Identity
-