Gpyr000066.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401860.1:537490-544156[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 9.4e-08 31.9 0.0 4 39 170 206 167 210 0.90 2 4 5.3e-11 2.7e-08 33.6 0.3 2 39 222 259 221 262 0.92 3 4 2.2e-16 1.1e-13 50.8 0.1 2 45 277 321 276 321 0.96 4 4 1.3e-17 6.7e-15 54.7 0.0 1 44 328 372 328 373 0.96
Sequence Information
- Coding Sequence
- ATGTCCAGCTCTGGATGTGCTGCTGTAAAATGTGAACCTCCGTCTGATGAAGAAGATGACAGCCCTCAGTTATTCCATAACACGCTTTCTTCAGATTTCCATGCACTTACTTCTGTAAAAGTAGAAGCAGGCTACCACAATGATGAGGGTATCCCGACATTGCTTCAACACTTACAGCAACAGCGTCCTGAAAGGCTGGAAGAGCTGGCCCCGCTGGCGCCAGCCGGACCCGCCGCCACTCCCGTTTGCGTGAAACAAGAGCCCGTGGAGACATCCGCCCTCAATCTGGAGACCTTGGAACCTGTACCACATAGCACGGGATCGTTGTTGGGAAGACACATGGCCATGTCGAGGTCATCTGAAGTGCCCGACTCCGCAAACTTCACGCCGCTGCTCTCAACAGTCAAGGATGAACTGTCCTCTGAAGGAGAGCAGCAGCCCTTGAGTGCCGAGGAGCTGGGCGAGTCATGTGCGCAGCGCGCGGGCGCCAAGGCGTGGTCGCAGCAGGACATGGAGCACGCACTCGATGCACTCCGCAGCCACAACATGAGCTTGACTAAAGCATCATCGACATACAACATTCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCGCCGCCAAGTCGTGGAGCGAGGCCGACCTGCGCGGCGCGCTGCACGCGCTCAGAGCCGGCGCCATATCCGCTAACAAGGCTAGCAAGGCTTATGGTATCCCCAGCAGCACGCTGTACAAGATAGCCCGTCGCGAAGGCATTCGTTTGGCGGCGCCATTCAACGCGGCTCCCGTGGCGTGGCGGCGCGGCGACCTGCAGAGAGCATTGGCTGCTATTCGCTCCGGACGAGCCTCCGTGCAGAGAGCTGCCTCACAGTATGGAATACCCACTGGCACTCTTTATGGACGCTGTAAACGAGAAGGCATTGAGTTGTCCCGATCGAACCCGACGCCGTGGTCTGAAGACGCCATGGGAGAGGCATTGGAAGCCGTCAGGATCGGGCAGATGTCCATAAACCAGGCCGCTATACACTTCAACCTGCCGTACTCCTCGCTCTACGGAAGATTCAAGCGCTGCAAGTACCACGTTCAGCCGATGCCACAGCAAGAAATGCAAAACCCTCCGGAAATGGTTCACAGCCACCAAGAAATGAGCTACTACAATCAAATGCCGATGTACCCCGAACGCGAGCACTCCACCGTCCAACATACATTGCCTCACGAGTACGTCCCGGATCCCTCGAATAACATCCAAGACCCCTACTCGCAGGCAATGTATTACAACCAAAACTTTAGCAGCATAGCGACTAGCTGA
- Protein Sequence
- MSSSGCAAVKCEPPSDEEDDSPQLFHNTLSSDFHALTSVKVEAGYHNDEGIPTLLQHLQQQRPERLEELAPLAPAGPAATPVCVKQEPVETSALNLETLEPVPHSTGSLLGRHMAMSRSSEVPDSANFTPLLSTVKDELSSEGEQQPLSAEELGESCAQRAGAKAWSQQDMEHALDALRSHNMSLTKASSTYNIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALAAIRSGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYHVQPMPQQEMQNPPEMVHSHQEMSYYNQMPMYPEREHSTVQHTLPHEYVPDPSNNIQDPYSQAMYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632679; iTF_00686254; iTF_00638571;
- 90% Identity
- iTF_00686254;
- 80% Identity
- -