Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021712.1:4907942-4924417[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.036 5.6 8.8 0.4 2 23 264 286 263 286 0.89

2 17 0.00097 0.15 13.7 0.4 2 23 343 365 342 365 0.95

3 17 0.17 26 6.7 2.2 1 21 371 391 371 392 0.95

4 17 4.8 7.3e+02 2.1 0.1 1 23 403 425 403 425 0.90

5 17 0.00053 0.082 14.5 4.6 1 23 486 509 486 509 0.96

6 17 0.014 2.2 10.0 2.5 2 23 516 538 515 538 0.95

7 17 0.004 0.62 11.8 4.0 1 21 637 657 637 658 0.95

8 17 0.018 2.7 9.8 0.9 2 23 670 692 669 692 0.91

9 17 0.45 69 5.3 1.6 1 23 695 718 695 718 0.96

10 17 0.00098 0.15 13.7 0.9 3 23 725 745 723 745 0.96

11 17 0.8 1.2e+02 4.5 0.3 1 23 749 772 749 772 0.94

12 17 1.1 1.7e+02 4.1 0.5 2 23 779 801 778 801 0.93

13 17 0.024 3.7 9.4 0.4 2 23 810 832 809 832 0.95

14 17 1.2 1.8e+02 4.0 0.1 3 19 839 855 838 861 0.91

15 17 2.5 3.9e+02 3.0 2.6 2 23 1004 1026 1003 1026 0.94

16 17 0.46 71 5.3 0.4 2 23 1033 1055 1032 1055 0.93

17 17 0.43 67 5.4 0.9 1 23 1068 1090 1068 1090 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.036	5.6	8.8	0.4	2	23	264	286	263	286	0.89
2	17	0.00097	0.15	13.7	0.4	2	23	343	365	342	365	0.95
3	17	0.17	26	6.7	2.2	1	21	371	391	371	392	0.95
4	17	4.8	7.3e+02	2.1	0.1	1	23	403	425	403	425	0.90
5	17	0.00053	0.082	14.5	4.6	1	23	486	509	486	509	0.96
6	17	0.014	2.2	10.0	2.5	2	23	516	538	515	538	0.95
7	17	0.004	0.62	11.8	4.0	1	21	637	657	637	658	0.95
8	17	0.018	2.7	9.8	0.9	2	23	670	692	669	692	0.91
9	17	0.45	69	5.3	1.6	1	23	695	718	695	718	0.96
10	17	0.00098	0.15	13.7	0.9	3	23	725	745	723	745	0.96
11	17	0.8	1.2e+02	4.5	0.3	1	23	749	772	749	772	0.94
12	17	1.1	1.7e+02	4.1	0.5	2	23	779	801	778	801	0.93
13	17	0.024	3.7	9.4	0.4	2	23	810	832	809	832	0.95
14	17	1.2	1.8e+02	4.0	0.1	3	19	839	855	838	861	0.91
15	17	2.5	3.9e+02	3.0	2.6	2	23	1004	1026	1003	1026	0.94
16	17	0.46	71	5.3	0.4	2	23	1033	1055	1032	1055	0.93
17	17	0.43	67	5.4	0.9	1	23	1068	1090	1068	1090	0.95

Sequence Information

Coding Sequence: ATGAAGGTGACCCCATACTCTCTTCTTCCGGATACCATTTGCGGAGATTGCGCGGAAAGCGTAGACAAATTCTATTCCTTTATAAAGAATTGTTTACAAAACATCATCATTCTAGAAGCACAATTGGACATACAGGAATCCTGCTTGAAATCCAAACAAAAAAGAGACAAGAGCAGCCTGGTCGACTTCAGCCACAAGCAGATCAGCAAAGCAAATCAGACGGATGATTATTTGGACGTTTTAATTGGAAAACACGTTGACCTTGAGGAATTTAGACAGAGCTTCCCTCACACAATTAACTATCTAAACAACCCTATCAGTTCGgtgaaacaaaatcaaattcgTTTAGTTGATTACGACGTCGACTCCGAATCTAGTCTCGATGAATGTTTCGACGGCAAAGGTGAAATTATTCTATGTGATAAATTACAGTCTTTTACTAAAATCTGCAAATTAGTTGACTCTTATACTAGTCGACGGGTGTTTCCACCGAAAACTCACTATTTTGACGATACCCAGAAAAATTTGATCCATGAAATATCCCAAAGAAAAAATctcaaaagaaaaaatgaatttattgaaatgCACAAGCCAAAAATTTACAAACTAGATAGTTGTCATAGAAGAAAAAGTAAGATACCAAAGAAATTAGATACTCCAAATATTTGCGaggaaaattttaattatgaaCATCCGGAGAATTTTCTCGAACAAGATCCTATTAAAAAGGAGTTGATCAACGGAGACCCGGAAAATCAGCAAAATACActACTCTCTTCTTTACCACAAAGTTGTTTGTTATGCGATACTCACTTTTCCGGGCCTTCGGCTCTAGCGACACATGTATTCGAATTTCACGGGATCGACATGTCTGAAGTTGTATCTTCCGGATCTGGAGAATCGTTTCCAGAGAAGAGCAAGAAAAAGTTACCAAATCTCGTTAAGATCTCCGATCTCAAAAAGACTGAATCGATAgATACTATCCAATCTTCTGAACCTCAGCAAGAttcgaaattttcgaaattgtCCTGCCCGAATTGTTCAGGAGTATTTACCAGTAAACAGGATCTCATGATGCATTTAAGACTGAAACACGCTCAGCTAGCAGGATTCGTTTGCGGCATATGCCTACATCAATGTTCTTCGCATATGAATTTGAAAGCTCATCTCCAAAATTGTTCTAATCCTCAAGCTACACCCACCAAATATATCTGTCAGATATGTCAGTACGGCGATGATAACTTCAAGTGGTTGGAAAACCACGTTTTAGTACACGATTTTTTAATAGAAACTTGTAAGAAACAAATGCGAATGTTCGACCCGGAAGACTTCATAGACATAAACGAAGCATGCGCCAACACTCCTTATAAAGGTTTGAGCTGCGTCGATTGCGGTTTAGACGAATTCTATTCGTTTAAAGAATTCAGCGCTCATAGAAGAAACGAACACTCCAACTTCCATTGCGATCTTTGCAATAAATTTTACGGGCGCAATTCTCATTTATGGAAACACGTTAATAGACTGCACAAAGGCCATCCGAGCATTACTTGTCAAGTGTGTTACAAAACGTCTGCTTCCAAGTATCATCTGTCGCAACATTTCAATAAGATCCATCTAGCCAAAGGCGGTAAAAAGTCTGCTACAGAAAAGGAAACGTTACCTTCCAAATTTTCGTTTGATTTTCTATCTTCGaaacaaaattttatcaaaGAAGAATTCGAATATCCCAGCGAACAAGACGATAATTCGAATTTAAATTTCGAAGAAGATAACGGTATTAAAGAAGAATACGACGAAGATTCTAACAATAAAAACGAACCGCCCAGCGCGCCTAAGGAAATAGACTCTTCTCATGACATGTACACGAATATCATTACGAATTATACGCCACCGTTGAACGATGGCGATTTTAAATGTCCCAAATGCTCTAAAGGCTTTCATAAAAAAATGCTACTCAAGAAACACAAAAAGAATTGCAGACCGAGAATGCAAAAAGATTTGTTAACGAGATGTAAAAGCTGCGCTAGAATCTTTAAAGACCGCCAAAGCCTAGCCAAACATCTAGTAAACTACCATTCAGAGTACACTTGCGAAATTTGTACCGAAAAAGTACAAAGTAAATGCGAAATAGTGTCACATATAAGATTCAGACACCCCGGCTGTCCGTTATTTTGCAGGATATGTACAAATGTTTTAAGAAGCAAGAGCGATCTTCAAGAACACATGAGAAACCATTTCGATTCTCACATTTGTCAGTTTTGCGGTGACCCGTTACCGAGTAAAATCAAACTAAAGATGCACATACTCAGTTTACATCGGAAAATTCTAAGCTTATCGTGTGGTATATGCTTAAAGTTGTTCGAAAATCAACATATTCTCCGAGATCACGTTAAATTAGTCCACAAAAATCAACTGACGCCTTTAACGTCGTGTCCAGTTTGCGGCAAAAATTACGGCTCCAAGTGGAAGACCTACGATCATATCAACAAATCCCATGGTAGAATATTCAAGGCGTGTAAAACGTGCTTGGAAATATTCGATAACGATGCTCAATTGCAGGCGCATAGTGATGTTACCGCTCACGGGGGAGGAGGTGGACAAGTCGGCAATTCTAACACGGCAGCTCTCAGAAACAGTATTATGGCTCATATAAAGTCTGCAATTAACGAAGTTGTAGAACATAACGATGAGAACAATGATGGATCGGATAGTGAGGATGAGGGTGAATCTGACGGTGAAAAACAAGAGTTCGAAGAACCCAAGTTCTATTTATCTCAAAACGCCAAAATATCATTATTAGAAAAACGATTGTTGGGTAAGACATTAACGGATGACGAAATCAGTATTAAACCTAAATTAGCAGTAGTCAGTAGCAATAAGAAAACTAAAATACCCATCAACGAAACCAAATCCAAAACATcgaacaaaaaagaagaagaatcagATCCTGCAAATCCTCAAACAAATTCGTCAAAGCGCACAGTGTACGTTAACAGTAACGATCCATCTTATTGTGAAATTTGCTACAAGACTTGGCCGGCCAAGAAGCATCTTTGGCAACATTACATACGTTGTCATAAACGCGTAGCAGCTACAGTTTGTGGAATATGCTTAAAAACGAATGACAACTACTACACCCTTCAGAATCATCTAAGAGACAATCATCCGAAACTATTACATGGTCAAGGTTTTGGTTCGAATTTTATATGCAGGATATGCGGAAGATATCACAACGCTAGTTCTAAATTAAGATTGCATATGGTAATACACGAAAATTTCGATTGGAAACTTTTGGACGGAGATAAATCCGACAAAGATATGATTTCTAAGTCTACAACTAACGGCTTCAAATTTACAAAGGGATCCGAAAGAGAAGAATTcgatgaaaatattaattatgaAAGTTTAATCGAACAAGTCGAGTGCTCTTCACAGTCAGAAAACGAAGAATCCGATAACGATCAAGCCGTGCAACTCAAACAAGACGATTCTTCTTCCTCCGACGAACAAGAAGAAGCCAGCGAAGATTCTGTGATATCGTCCAATTCCATACAGggtgaaattaataaaaaaataccgaTATCAACGCAACAAGAATCCTCACAACGTCAAGAACGTTCTTCCTCTAGCGAAGATTCAAGCACAAGTTATTCGGAAGGAAGTAAAAGTGATTCTTCCGATGATTGTTCACGAGCGTCTCAGTCATTGTCCTCTCAAAGTAAGTTTAATCCCAGATCTAATTCCAATACTGGTGATTCGGTGTCGAGTGGTAATATTTTTAAGCGAAAACCAGGAGAACTAGATTCGGCTATTAAATCTATTAGTTATGAATGTATGGAACCGGTGGATCTCAACGTAGTCGACGATTATTGCGATTTGCAAAATAATTGTCTTAACGAGAATGAAATCGAATCTGCTGTTGGTAGTATTCTTTAA
Protein Sequence: MKVTPYSLLPDTICGDCAESVDKFYSFIKNCLQNIIILEAQLDIQESCLKSKQKRDKSSLVDFSHKQISKANQTDDYLDVLIGKHVDLEEFRQSFPHTINYLNNPISSVKQNQIRLVDYDVDSESSLDECFDGKGEIILCDKLQSFTKICKLVDSYTSRRVFPPKTHYFDDTQKNLIHEISQRKNLKRKNEFIEMHKPKIYKLDSCHRRKSKIPKKLDTPNICEENFNYEHPENFLEQDPIKKELINGDPENQQNTLLSSLPQSCLLCDTHFSGPSALATHVFEFHGIDMSEVVSSGSGESFPEKSKKKLPNLVKISDLKKTESIDTIQSSEPQQDSKFSKLSCPNCSGVFTSKQDLMMHLRLKHAQLAGFVCGICLHQCSSHMNLKAHLQNCSNPQATPTKYICQICQYGDDNFKWLENHVLVHDFLIETCKKQMRMFDPEDFIDINEACANTPYKGLSCVDCGLDEFYSFKEFSAHRRNEHSNFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQVCYKTSASKYHLSQHFNKIHLAKGGKKSATEKETLPSKFSFDFLSSKQNFIKEEFEYPSEQDDNSNLNFEEDNGIKEEYDEDSNNKNEPPSAPKEIDSSHDMYTNIITNYTPPLNDGDFKCPKCSKGFHKKMLLKKHKKNCRPRMQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYTCEICTEKVQSKCEIVSHIRFRHPGCPLFCRICTNVLRSKSDLQEHMRNHFDSHICQFCGDPLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILRDHVKLVHKNQLTPLTSCPVCGKNYGSKWKTYDHINKSHGRIFKACKTCLEIFDNDAQLQAHSDVTAHGGGGGQVGNSNTAALRNSIMAHIKSAINEVVEHNDENNDGSDSEDEGESDGEKQEFEEPKFYLSQNAKISLLEKRLLGKTLTDDEISIKPKLAVVSSNKKTKIPINETKSKTSNKKEEESDPANPQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKRVAATVCGICLKTNDNYYTLQNHLRDNHPKLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWKLLDGDKSDKDMISKSTTNGFKFTKGSEREEFDENINYESLIEQVECSSQSENEESDNDQAVQLKQDDSSSSDEQEEASEDSVISSNSIQGEINKKIPISTQQESSQRQERSSSSEDSSTSYSEGSKSDSSDDCSRASQSLSSQSKFNPRSNSNTGDSVSSGNIFKRKPGELDSAIKSISYECMEPVDLNVVDDYCDLQNNCLNENEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459333; iTF_00912557; iTF_01106767; iTF_00911478;
90% Identity: iTF_00912557; iTF_00911478;
80% Identity: -