Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055257.1:26269403-26280993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0076 0.7 11.0 0.8 2 23 289 311 288 311 0.89

2 18 0.001 0.093 13.7 0.4 2 23 365 387 364 387 0.95

3 18 0.31 28 5.9 1.5 1 20 393 412 393 414 0.95

4 18 9.5 8.7e+02 1.2 0.1 1 23 424 446 424 446 0.88

5 18 8.4 7.6e+02 1.4 0.5 2 23 481 504 480 504 0.83

6 18 0.00056 0.051 14.5 4.6 1 23 507 530 507 530 0.96

7 18 0.03 2.8 9.1 2.8 2 23 537 559 536 559 0.95

8 18 0.0042 0.39 11.8 4.0 1 21 654 674 654 675 0.95

9 18 0.0061 0.56 11.3 1.0 2 23 687 709 686 709 0.92

10 18 0.17 15 6.7 1.2 1 23 712 735 712 735 0.96

11 18 0.0059 0.54 11.3 1.2 3 23 742 762 740 762 0.96

12 18 0.18 16 6.7 0.5 1 23 766 789 766 789 0.96

13 18 1.1 1e+02 4.1 0.5 2 23 796 818 795 818 0.93

14 18 0.025 2.3 9.3 0.4 2 23 827 849 826 849 0.95

15 18 3 2.7e+02 2.8 0.3 3 19 856 872 855 873 0.97

16 18 2.7 2.4e+02 3.0 2.6 2 23 1020 1042 1019 1042 0.94

17 18 1 93 4.3 1.0 2 23 1049 1071 1048 1071 0.90

18 18 0.46 42 5.4 0.9 1 23 1084 1106 1084 1106 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0076	0.7	11.0	0.8	2	23	289	311	288	311	0.89
2	18	0.001	0.093	13.7	0.4	2	23	365	387	364	387	0.95
3	18	0.31	28	5.9	1.5	1	20	393	412	393	414	0.95
4	18	9.5	8.7e+02	1.2	0.1	1	23	424	446	424	446	0.88
5	18	8.4	7.6e+02	1.4	0.5	2	23	481	504	480	504	0.83
6	18	0.00056	0.051	14.5	4.6	1	23	507	530	507	530	0.96
7	18	0.03	2.8	9.1	2.8	2	23	537	559	536	559	0.95
8	18	0.0042	0.39	11.8	4.0	1	21	654	674	654	675	0.95
9	18	0.0061	0.56	11.3	1.0	2	23	687	709	686	709	0.92
10	18	0.17	15	6.7	1.2	1	23	712	735	712	735	0.96
11	18	0.0059	0.54	11.3	1.2	3	23	742	762	740	762	0.96
12	18	0.18	16	6.7	0.5	1	23	766	789	766	789	0.96
13	18	1.1	1e+02	4.1	0.5	2	23	796	818	795	818	0.93
14	18	0.025	2.3	9.3	0.4	2	23	827	849	826	849	0.95
15	18	3	2.7e+02	2.8	0.3	3	19	856	872	855	873	0.97
16	18	2.7	2.4e+02	3.0	2.6	2	23	1020	1042	1019	1042	0.94
17	18	1	93	4.3	1.0	2	23	1049	1071	1048	1071	0.90
18	18	0.46	42	5.4	0.9	1	23	1084	1106	1084	1106	0.95

Sequence Information

Coding Sequence: ATGTTTTCATCTATGTACTGCCAcacggaaacaaaaaaagtatctGCATGGAAAGAGGATAATTGGTGGGAACCCTGTATAACGAAGGTGACCCCGTACTCTCTTCTTCCCGATACAATTTGTGGAGAATGCGCGGAGAGCGTAGACGCTTTCTACATGTTCATAAAGAACTGTAtacaaaacattataattttagaAGCACAATATGATATACAGGAATCCTGTTTAAAATCTAAACAGAAAAGAGATAAAAGCTGCTTCGTCGATTTCAGCCATAAAAAGATCAATAGAGGAAGTCAGACGGACGACAGTTTGGACGTTTTATTTGGAAAGAATTTCGATATCGACGAATTTAGAAACAGTTTTCCTCACACGACTAATTATCTGAGCAATCCGAGCAGTTTGATGTCCCAAAATGAGATTCGTTTGGTTGATTATGATATTGATTCCGAATCTAGTCTTGATGAACACTTTGACGGTAAAGGAGAAATTATTCTATGTGATAAATTGCAGtcgtttaataaaatttgcAAATTAGTCGATTCTTATACTAATAGGCGAGTATTTCCGACGAAAACCAACTATTTCGATGATACCGAAACAAATTTGATCAGCGAAATATCCCAAAGAAAAAATCTTAAAAGGAAAAATGAGTTTATTGAAACgtacaaaccaaaaatttacAAACTCGATACTtctaatagaagaaaaaataagataCCAAAGAAATTAGATACCCAAGATAATagagaagaaaattttaatcgCGAAAATCTCGTACAAGATCAGATCAAGGAGTTGACTAACGGAGAACGGGAAATCCAACAAAAtacaAACGAAAAGCTGCTGTCTTCTTTACCCCAAAGTTGTTTATTGTGCGATACTCATTTTTCCGATTCTTCAGCATTGGCATCACATGTATTCGAATTCCATGGTATCGATATGTCAGAAGTTGTATCTTCGGGATCGGGCGAATCGTtaccggaaaaaggaaagaagaaGTTACCGAAACTCGTGAAAATATCTGATCTCAAAAAGACTGATTCAATAGAACATAACCAATCTTCCGAACATCAGCAAAGCTCGAAATTGTCCTGCCCTAATTGTTCGGGAGTTTTTACCAGTAAACAAGATCTCATGATGCATTTAAGACTGAAACACGCACAAATAGCTGGATTCGTTTGCGGTATATGCCTCCATCAATGCTCCTCgtatatgaatttgaaaacgCATCTTGAAAATTGCTCGAATCCTCAACCAAACACTAAATATATATGTCAGATATGTCGATACGGCGATGACAATTTCAAATGGTTGGAAAATCATGTCTTAGTACACGATTTTATAATAGAAACTTGTAAAAAGCAAATGAGAATGTTCGATCCGGAAGATTTTATAGTTATTAATGAAGCATTCGCGGACACTCCGTATAAAGGTTTGAGTTGCGTAGATTGTGGTCAAAACGAATTCTTCTCTTTCAAGGAATTCAGCGCGCACAGAAGAAACGAACATTCGAATTTCCATTGCGATCTCTGCAATAAATTTTACGGACGAAATTCTCATTTATGGAAACACGTTAATAGACTGCACAAAGGTCATCCGAGTATTACATGCCAATTGTGTTACAAGACGTCCGCTTCCAAATACCATCTTTCGCAACACTTTAACAAGATCCATCTTACTAAAAGTAGCAAAAAATCTATGAATCAAtcagaaaaacaaacaaaatttccattCGATTATTCCCCgttaaaaccaaaatttatcaaagaCGAATTCGATTATCGCAGCGATAATTCGAATATAAATTTCGATGAAGTTGCCATCAAAGAAGAATCGGACGAGGATTCGAATAATATAAAGGACGAGCCACCTAGCGCGCCGAAGGAAATAGATTCGTCTCACGATATGTACACGAATATCATTACAAATTATACGCCGCCATTGAACGACGGCGATTTCAAATGTCCCAAATGTTCTAAAGGTTTCCACAAAAAAATGTTgctaaaaaaacacaaaaaaaattgcagaCCTAGGATGCAGAAAGATCTACTGACTAGATGCAAAACTTGTGCTAGGATATTCAAAGATCGTCAAAGCCTCGCTAAACATTTAGTCAACTACCATTCCGAATACACATGCGAAATATGTACCGAAAAAGTCGAAAGCAAATGCGAAATAGTGTCGCACATAAGGTTCAGACATCCGGGTTGTCCGTTGTTCTGTAGAATATGTAAAAACGTATTGAGAAGCAAGAGCGACCTCCAAGAGCACACGAGAAACCATTTCGATTCACATGTTTGTCAATTTTGCGGCGATTCCTTACCGAGTAAAATCAAATTGAAGATGCACATACTCAGTTTACACCGTAAAATTCTTAGTTTATCTTGCGGCATATGTTTGAAGTTATTCGAAAATCAACATATCCTAAGAGATCACGTTAAGCTGATCCACAAAAATCAATTGACGCCGCTGACTTCGTGTCCGGTTTGTGGAAAAAATTACGGTTCCAAATGGAAAACCTACGATCATATCAATAAATCTCACGGCAGGATATTCAGGGCGTGTAAAACGTGCTTGGAGATATTTGATAATGATGCTCAATTACAGGCGCATTGTGACGTTACCGCTCATGGGGGACCGGTCGGTAATTCTAATACGGCGGCTCTAAGGAACAGTATTATGGCTCATATTAAGTCTGCTATCGATGAAGTAGTTGAACAAAATGATGAAATCAACGACGATTCCGATAGTGATGACGAGgGTGAATCTGATGGCGCttacaaaaaacaacaaattgaggaaaccaaattttatttacctCAAAACGATAAAATATCCTTATTGGAAAAGCGATTATTGGGTAAAACAATAACCGACGACGAAACCAATATTAAACCGAAACAAACTATAACTAACAgcaataagaaaattaaaatatcaaataacgAAACAAAATccaaaacaacaaacaaaaaagaagatgaaTCGGATGGTACCAATCCGCAAACCAACTCGTCGAAACGAACAGTGTACGTCAATAGTAACGATCCATCTTATTGTGAGATCTGCTACAAAACCTGGCCGGCGAAAAAGCACCTTTGGCAACATTACATACGTTGTCATAAAAGCGTAGCTGCCACAGTTTGTGGAATATGTTTGAAAACCAACGATAATTATAAAGCTCTACAACATCATCTGAGAGACAATCATCCAAAACTATTGCACGGTCAAGGTTTCGGTTCAAATTTTATATGCAGGATATGCGGAAGGTATCATAACGCCAGCTCCAAGTTGAGGTTGCATATGGTGATCCACGAAAATTTCGATTGGAAGCTTTTAGATGAAGATAAATCTGACAATGACATTAATCCTAAATCGACAACAAACGGCTTCAAATTTACAAAAGGATCCGAAAGAGAAGAATACGATGATAATATCAACTACGAAAGTTTAATAGAACAAGTAGAATGTTCTTCACAATCGGAAAATGAAGAATCAGAAAACGATCAACCCGATCAACTTAAACAAGAGGtttcttcctcatctgaagatCAAGAAGAGGCAAGCGAAGATTCAGTTTTATCATCCAATTCAATACAggatgaaattgataaaaaaataccgaTTTCAACGGAACAAGAGACTTCACAACGTCAAGATTGCCATTCTAGTGAAGATTCAAGCACCACTTTTTCTGATGACAGTAAAAGTGATTCCTCGGATGATTGTTCTCAAGCGTCTCAATCAATGTCATCGCAAAGTAAATTTAATCCTAGATCTAATTCTAATACTGCTGATTCGTCGATAAGCAGTAATATTTTCGAAAGAAAACCGGAAGAACTCGATTCGGCTATCAAATCTATTAGCTACGAATGCATACAACCAGAGGACCTCAACGTAGTCGACGATTATTGCGATTTgcaaaataattgtttgaacGAGAACGAAATCGAATCCGCGGTTGGTAGTATCCTTTAA
Protein Sequence: MFSSMYCHTETKKVSAWKEDNWWEPCITKVTPYSLLPDTICGECAESVDAFYMFIKNCIQNIIILEAQYDIQESCLKSKQKRDKSCFVDFSHKKINRGSQTDDSLDVLFGKNFDIDEFRNSFPHTTNYLSNPSSLMSQNEIRLVDYDIDSESSLDEHFDGKGEIILCDKLQSFNKICKLVDSYTNRRVFPTKTNYFDDTETNLISEISQRKNLKRKNEFIETYKPKIYKLDTSNRRKNKIPKKLDTQDNREENFNRENLVQDQIKELTNGEREIQQNTNEKLLSSLPQSCLLCDTHFSDSSALASHVFEFHGIDMSEVVSSGSGESLPEKGKKKLPKLVKISDLKKTDSIEHNQSSEHQQSSKLSCPNCSGVFTSKQDLMMHLRLKHAQIAGFVCGICLHQCSSYMNLKTHLENCSNPQPNTKYICQICRYGDDNFKWLENHVLVHDFIIETCKKQMRMFDPEDFIVINEAFADTPYKGLSCVDCGQNEFFSFKEFSAHRRNEHSNFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLTKSSKKSMNQSEKQTKFPFDYSPLKPKFIKDEFDYRSDNSNINFDEVAIKEESDEDSNNIKDEPPSAPKEIDSSHDMYTNIITNYTPPLNDGDFKCPKCSKGFHKKMLLKKHKKNCRPRMQKDLLTRCKTCARIFKDRQSLAKHLVNYHSEYTCEICTEKVESKCEIVSHIRFRHPGCPLFCRICKNVLRSKSDLQEHTRNHFDSHVCQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILRDHVKLIHKNQLTPLTSCPVCGKNYGSKWKTYDHINKSHGRIFRACKTCLEIFDNDAQLQAHCDVTAHGGPVGNSNTAALRNSIMAHIKSAIDEVVEQNDEINDDSDSDDEGESDGAYKKQQIEETKFYLPQNDKISLLEKRLLGKTITDDETNIKPKQTITNSNKKIKISNNETKSKTTNKKEDESDGTNPQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNDNYKALQHHLRDNHPKLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWKLLDEDKSDNDINPKSTTNGFKFTKGSEREEYDDNINYESLIEQVECSSQSENEESENDQPDQLKQEVSSSSEDQEEASEDSVLSSNSIQDEIDKKIPISTEQETSQRQDCHSSEDSSTTFSDDSKSDSSDDCSQASQSMSSQSKFNPRSNSNTADSSISSNIFERKPEELDSAIKSISYECIQPEDLNVVDDYCDLQNNCLNENEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00736187;
90% Identity: -
80% Identity: -