Ocom051809.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068987.1:8819713-8833967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 5.8 9.9 0.3 3 23 273 294 271 294 0.91 2 17 0.0092 3.4 10.7 0.3 2 23 350 372 349 372 0.95 3 17 0.05 18 8.4 1.3 1 22 378 399 378 399 0.96 4 17 2.8 1e+03 2.9 0.1 1 23 410 432 410 432 0.91 5 17 0.00055 0.2 14.6 4.6 1 23 493 516 493 516 0.96 6 17 0.029 11 9.1 2.8 2 23 523 545 522 545 0.95 7 17 0.0041 1.5 11.8 4.0 1 21 639 659 639 660 0.95 8 17 0.018 6.6 9.8 0.9 2 23 672 694 671 694 0.91 9 17 0.45 1.6e+02 5.4 1.5 1 23 697 720 697 720 0.95 10 17 0.0058 2.1 11.3 1.2 3 23 727 747 725 747 0.96 11 17 0.17 63 6.7 0.5 1 23 751 774 751 774 0.96 12 17 1.1 4e+02 4.2 0.5 2 23 781 803 780 803 0.93 13 17 0.024 8.9 9.4 0.4 2 23 812 834 811 834 0.95 14 17 2.9 1.1e+03 2.8 0.3 3 19 841 857 840 858 0.97 15 17 2.6 9.4e+02 3.0 2.6 2 23 1002 1024 1001 1024 0.94 16 17 0.42 1.5e+02 5.5 0.6 2 23 1031 1053 1030 1053 0.93 17 17 0.45 1.6e+02 5.4 0.9 1 23 1066 1088 1066 1088 0.95
Sequence Information
- Coding Sequence
- ATGCCATACAATAACCTGAGAGTGACTCCCTACTCTCTTCTTCCCGATACCATTTGCGGAGATTGCTCGGAAAGCGTAGACAGTTTCTACACCTTCATAAAGAATTGTTTACAAAACATTATCATACTAGAAGCCCAATACGACATACAAGAATCCTGCTTGAAATCCAAACAAAAACGAGATAAGAGTTGCTTCGTCGATTTCAGTcacaaacaaattagtaaagGAAATCAGACAGATGATTATTTGGATGTTGTGATCGGAAGACATTTCGATCTCGAAGAATTTAGACAAAGTTTTCCACACACTATCGAATATCTGAACAAACCTATAAGTTTGATGTCGCAAAATGAAATTCGTTTGGTCGATTACGATGTTGATTCCGAATCTAGTCTAGATGAAAACTTCGACAGTAAAGGCGAAATTGTTCTATGTGATAAATTAcgaaattttactaaaatttgcAAATTGGTCGACTCCTATACCAGCAGGCGAGTATTTCCATCTAAAACCGACTATTTCGACGATAccgagaaaaatttaataacagaaatatcccaaagaaaaaatcttaagagaaaaaacgaatttattgaaACGTACAAACCAAAAATTTACAAACTCGATACTTGCAATCGAAGAAAAAACAAGATACCAAAGAAGTTAGATACTCAAGATATTAgcgaagaaaattttaattatgagaATCAGGAGAGTGATGTCCTCAAACATGATCCTATCAAGAATGAGTTCATTAACGGAGAACCTGAAAGTCATCAAAATCCAaatgaaaaGCTGCTGTCTTTAACGCAAAATTGTTTGTTATGTGATACACAGTTCTCGGATACTTCAGCTCTAGCATCACATATATTTGAATTTCATGGAATCGATATGTCCGAAGTTTTATCTTTGGGTTCAGGAGAATTGTCTCCAGATAAAGGAAAGAAAAAGTTACCGAATCTTGTCAAAATTTCAGATCTCAAAAAGACTGAATCCATAGtttcagaaaataatcaatCTTCGGAGACTCAACAATTTTCGAAATTGACCTGCCCAAATTGCTCAGGAGTATTTACCAGTAAGCAAGATGTAATGATGCATTTAAGACTGAAACATGCACAGGTAGCCGGATTTGTTTGCGGCATATGTTTGTACCAATGCACCTCTTACATGAACTTAAAAACTCATCTTCAGACTTGCTCCAATCCCCAATCGACGTCTACTAAATATGTTTGCCAGATTTGTCAATACGGAGACGACAATTTTAAATGGTTGGAAAACCACGTTTTAGTCCACGATTTCGTAATAGAATCTTGTAAGAAGCAAATGAAAATGTTTGACCCcgaagatttcatagacgttaATGAGGAGTACGCAAACACGCCCTATAAAGGTTTGAGTTGTGTTGATTGTAACCAAAACGAGTTTTATTCGTTTAAAGAATTCAGCGCACACAGAAGAAACGAGCATTCAAATTTTCATTGCGATTTGTGCAACAAATTCTATGGACGCAATTCTCATTTGTGGAAACATGTCAATAGATTACATAAAGGGCATCCGAGTATCACGTGCCAATTGTGTTACAAGACGTCAGCTTCAAAGTACCACCTTTCCCAACACTTTAACAAGATTCATTTGGCCAAAGGCAGTAAGAAATTCCCGGCTGAAAAAGAAACGTTACCATCGAAATTTTCGTTTGATTTTTTAACTGCAAAGGAGAATTTTATCAAAGAAGAATTCGAATATCCGAGCGATAATTCGAACGTTAATTTCGACCAAGAAGACGAGGTGGTTGTTAAAGAGGAATATGACGAAGATTCCAACAACAAAGACGCGCCTAAGGAAATCGACTCCTCGCACGATATGTACACCAATATCATTACGAATTATACGCCACCGTTGAACGACGGCGATTTCAAATGTCCCAAATGTTCGAAGGGTTTCCACAAAAAAATGCTgctcaaaaaacataaaaagaacTGCAGGCCAAAGATGCAAAAGGATCTCTTAACCAGATGTAAGAGTTGCGCTAGGATATTCAAGGATCGTCAGAGTTTAGCGAAACATCTAGTAAACTATCATTCGGAGTATACTTGTGAGATTTGTAGCGAGAAAGTACAGAGTAAGTGCGAGATAGTGTCTCATATCAGATTCAGACACCCGGGCTGTCCCTTGTTTTGTAGGATCTGCAAAAATGTCTTACGCAGCAAAAGTGATCTTCAAGAGCATACGAGAAATCACTTCGATTCCCACGTTTGCCAGTTTTGCGGCGATTCTTTACCCAGTAAAATCAAATTGAAGATGCACATACTCAGTTTGCACAGGAAGATTTTAAGCCTGTCGTGCGGtatatgtttaaaattattcgAAAACCAACACATTCTTAGAGATCACGTTAAGTTGGTGCACAAAAATCAGTTGACTCCTTTAACGTCGTGTCCAGTATGCGGCAAAAATTATGGTTCCAAATGGAAGACGTACGATCACATAAATAAATCACACGGCAGAATATTCAGGGCGTGCAAAACTTGCTTGGAGATTTTCGATAACGATGCTCAATTGCAGGCGCATTGTGATGTCACCGCTCATGGCGGACAAGTTGGCAATTCCAATACGGCAGCACTCAGAAACAGTATTATGGCTCACATAAAGTCTGCTATCAATGAAGTGGTGGAACATAACGATGATTCCGACAGCGACGATGAAGGTGAATCTGATGGAGaatataaaaaacaacaatttgaAGAACCTAAATTCTATCTATCACAAAACGACAAGATATCCTTGTTAGAAAAGCGATTAATGGGAAAAGCATTAACAGACGATGAAACGAATAATATTAAGCCAAAACTAGCATTAGTTAGTAGTACTAAGAAATCCAAAACGCCCGTTATGGATACTAAATCCAAAATGGCCAACAAGAAGGAGGAAGAAGCAGATTCGACTAATCCTCAAACAAATTCGTCCAAACGCACAGTATATGTTAATAGCAATGACCCATCCTATTGTGAAATTTGCTACAAGACCTGGCCAGCCAAAAAACATCTTTGGCAACATTACATACGTTGTCATAAAAGCGTGGCGGCCACAGTTTGCGGAATATGTTTGAAGACCAATGACAGTTACAAAACCCTTCAACGTCACCTTAGAGACAATCACCCAAAACTCTTGCACGGTCAAGGTTTCGGTTCGAATTTCATTTGCAGAATTTGCGGACGTTACCATAACGCAAGTTCAAAGTTAAGATTGCACATGGTCATTCACGAGAATTTCGATTGGAATCTTCTGGATGGAAATAAGTCAGACAAAGAGGCGGCTCCTAAATCTACCACCAACGGctttaaatttacaaaagaGTCCGAAAGGGAGGAGTACGAAGATAATATTAATTATGAAAGTTTGATTGAACAAGTGGAATGTTCTACTCAGTCAGAAAACGAAGAATCTGACAACGATCAAGCGGTGCAACTTAAGCAAGAAGATTCTTCTTCGTCTGATGAACAAGAAGAAGCTAGTGAAGATTCTGCAATATCGTCCAATTCTATACAGGgtgaaattgataaaaaaatgacACAAGAAGAATTCACACAACGTCAAGATTGTTCGTCTTCTAGCGAAGATTCGAGCACAAGTTTTTCTGATGGGAGTAAAAGTGATTCTTCTGATGATTGTTCGCAAGCGTCTCAATCATTGTCTTCGCAGAGTAAATTTAATCCTAGATCGAATTCCAACACTGTAGACTCGATGTTAAGCGGTAATATTTTTAGACGGAAACCAGAAGAACTTGACTCTGCTATTAAATCTATCAGTTATGAATGCATGGAACCGGTGGATCTTAACGTAGTCGATGAATATTGCGAGTTGCAAAATAACTGTCTTAATGAGAACGAAATAGAATCTGCAGTTGGTAGCATCCTTTAA
- Protein Sequence
- MPYNNLRVTPYSLLPDTICGDCSESVDSFYTFIKNCLQNIIILEAQYDIQESCLKSKQKRDKSCFVDFSHKQISKGNQTDDYLDVVIGRHFDLEEFRQSFPHTIEYLNKPISLMSQNEIRLVDYDVDSESSLDENFDSKGEIVLCDKLRNFTKICKLVDSYTSRRVFPSKTDYFDDTEKNLITEISQRKNLKRKNEFIETYKPKIYKLDTCNRRKNKIPKKLDTQDISEENFNYENQESDVLKHDPIKNEFINGEPESHQNPNEKLLSLTQNCLLCDTQFSDTSALASHIFEFHGIDMSEVLSLGSGELSPDKGKKKLPNLVKISDLKKTESIVSENNQSSETQQFSKLTCPNCSGVFTSKQDVMMHLRLKHAQVAGFVCGICLYQCTSYMNLKTHLQTCSNPQSTSTKYVCQICQYGDDNFKWLENHVLVHDFVIESCKKQMKMFDPEDFIDVNEEYANTPYKGLSCVDCNQNEFYSFKEFSAHRRNEHSNFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLAKGSKKFPAEKETLPSKFSFDFLTAKENFIKEEFEYPSDNSNVNFDQEDEVVVKEEYDEDSNNKDAPKEIDSSHDMYTNIITNYTPPLNDGDFKCPKCSKGFHKKMLLKKHKKNCRPKMQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYTCEICSEKVQSKCEIVSHIRFRHPGCPLFCRICKNVLRSKSDLQEHTRNHFDSHVCQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILRDHVKLVHKNQLTPLTSCPVCGKNYGSKWKTYDHINKSHGRIFRACKTCLEIFDNDAQLQAHCDVTAHGGQVGNSNTAALRNSIMAHIKSAINEVVEHNDDSDSDDEGESDGEYKKQQFEEPKFYLSQNDKISLLEKRLMGKALTDDETNNIKPKLALVSSTKKSKTPVMDTKSKMANKKEEEADSTNPQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNDSYKTLQRHLRDNHPKLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWNLLDGNKSDKEAAPKSTTNGFKFTKESEREEYEDNINYESLIEQVECSTQSENEESDNDQAVQLKQEDSSSSDEQEEASEDSAISSNSIQGEIDKKMTQEEFTQRQDCSSSSEDSSTSFSDGSKSDSSDDCSQASQSLSSQSKFNPRSNSNTVDSMLSGNIFRRKPEELDSAIKSISYECMEPVDLNVVDEYCELQNNCLNENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736187;
- 90% Identity
- -
- 80% Identity
- -