Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421403.1:15184238-15201531[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.044 9.1 8.6 0.4 2 23 284 306 283 306 0.89

2 17 0.001 0.21 13.7 0.4 2 23 363 385 362 385 0.95

3 17 0.19 38 6.6 1.1 1 21 391 411 391 412 0.95

4 17 5.1 1.1e+03 2.1 0.1 1 23 423 445 423 445 0.90

5 17 0.00058 0.12 14.5 4.6 1 23 506 529 506 529 0.96

6 17 0.031 6.3 9.1 2.8 2 23 536 558 535 558 0.95

7 17 0.0043 0.89 11.8 4.0 1 21 660 680 660 681 0.95

8 17 0.019 3.9 9.7 0.9 2 23 693 715 692 715 0.91

9 17 0.48 99 5.3 1.6 1 23 718 741 718 741 0.96

10 17 0.0011 0.22 13.7 0.9 3 23 748 768 746 768 0.96

11 17 0.87 1.8e+02 4.5 0.3 1 23 772 795 772 795 0.94

12 17 1.2 2.4e+02 4.1 0.5 2 23 802 824 801 824 0.93

13 17 0.026 5.3 9.3 0.4 2 23 833 855 832 855 0.95

14 17 3 6.2e+02 2.8 0.3 3 19 862 878 861 879 0.97

15 17 2.7 5.6e+02 3.0 2.6 2 23 1028 1050 1027 1050 0.94

16 17 1.6 3.3e+02 3.7 1.3 2 23 1057 1079 1056 1079 0.90

17 17 0.47 96 5.4 0.9 1 23 1092 1114 1092 1114 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.044	9.1	8.6	0.4	2	23	284	306	283	306	0.89
2	17	0.001	0.21	13.7	0.4	2	23	363	385	362	385	0.95
3	17	0.19	38	6.6	1.1	1	21	391	411	391	412	0.95
4	17	5.1	1.1e+03	2.1	0.1	1	23	423	445	423	445	0.90
5	17	0.00058	0.12	14.5	4.6	1	23	506	529	506	529	0.96
6	17	0.031	6.3	9.1	2.8	2	23	536	558	535	558	0.95
7	17	0.0043	0.89	11.8	4.0	1	21	660	680	660	681	0.95
8	17	0.019	3.9	9.7	0.9	2	23	693	715	692	715	0.91
9	17	0.48	99	5.3	1.6	1	23	718	741	718	741	0.96
10	17	0.0011	0.22	13.7	0.9	3	23	748	768	746	768	0.96
11	17	0.87	1.8e+02	4.5	0.3	1	23	772	795	772	795	0.94
12	17	1.2	2.4e+02	4.1	0.5	2	23	802	824	801	824	0.93
13	17	0.026	5.3	9.3	0.4	2	23	833	855	832	855	0.95
14	17	3	6.2e+02	2.8	0.3	3	19	862	878	861	879	0.97
15	17	2.7	5.6e+02	3.0	2.6	2	23	1028	1050	1027	1050	0.94
16	17	1.6	3.3e+02	3.7	1.3	2	23	1057	1079	1056	1079	0.90
17	17	0.47	96	5.4	0.9	1	23	1092	1114	1092	1114	0.95

Sequence Information

Coding Sequence: ATGCTTAGAAAGTATATTTTACATCCTGTTTATACTGTGATTGTTCTCAAATTTCTTGTGACCCCATACTCTCTTCTTCCGGATACCATTTGCGGAGATTGCGCGGAAAGCGTAGACAATTTCTACTCCTTTATAAAGAATTGTTTACAAAACATCATCATTCTAGAAGCACAATATGACATACAGGAATCCTGCTTGAAATCCAAACAAAAAAGGGACAAGAGCTGCTTGGTCGACTTCAGCCACAAGCAGACCAGCAAAGGAAATCAGACGGATGATTATTTGGACGTTTTAATTGGAAGACATGTTGACCTTGACGAATTTAGACAGAGCTTCCCTCACACAATTAACTATCTAAACAACCCTATCAGTACGGTGACTCAAAATGAAATTCGTTTAGTTGATTACGATGTCGACTCCGAATCTAGTCTCGATGAATGTTTCGACGGCAAAGGTGAAATTATTCTGTGTGATAAATTACAGTCTTTTACTAAAATTTGCAAATTAGTTGACTCTTATACTAGTCGGCGGGTGTTTCCATCGAAAACTGACTATTTTGACGATACCCAGAAAAATTTGATCACTGAAATATCCCAAAGAAAAAATCTCAAAAGAAAAAACGAATTTATTGAAACGTACAAGCCAAAAATTTACAAACTAGATAGTTGTAATAGAAGAAAAAGTAAGATACCAAAGAAATTAGATACTCCAAATATTTGCGaggaaaattttaattatgaacATCGGGAGAATTTTCTCAAACAAGATCCTATTAAAAAGGAGTTGATCAACGGAGACCCGGAAAATCTgcaaaatacgaacgaAAAGCTACTGTCTTCTTTGCCACAAAGTTGTTTGTTATGTGATACTCACTTTTCCGGACCTTCGGCTCTAGCGTCACATGTATTTGAATTTCACGGGATCGATATGTCTGAAGTTGTATCTTCCGGATCTGGAGAATCGTTTCCAGAGAAGAGCAAGAAAAAGTTACCAAATCTCGTTAAGATTTCCGATCTCAAAAAGACTGAATCGATAGatAATAACCAATCTTCTGAACCTCAGCAAGACTCGAAATTTTCCAAATTGTCCTGCCCGAACTGTTCAGGAGTATTTACCAGTAAACAGGATCTCATGATGCATTTAAGACTGAAACACGCACAGATAGCTGGATTCGTTTGTGGCATATGCCTATATCAATGTTCTTCGTACCTGAATTTGAAAAATCATCTTCAAAATTGTTCTAATCCTCAAGCTACACCCACAAAATATATCTGTCAGATATGTCAGTACGGCGATGATAACTTTAAGTGGTTGGAAAACCACGTTTTAGTACACgattttttaatagaaacttGTAAGAAACAAATGAGAATGTTCGATCCGGAAGACTACATAGACATAAACGAAGCATGCGCAAACACTCCCTACAAAGGTTTGAATTGCGTCGATTGCGGTTTAGACGAATTCTATTCGTTTAAAGAATTCAGCGCTCATAGAAGAAACGAACACTCCAACTTCCATTGCGATCTTTGCAATAAATTTTACGGACGCAATTCTCATTTGTGGAAACACGTTAATAGACTGCACAAAGGTCATCCGAGCATCACGTGCCAATTATGTTACAAGACGTCCGCTTCCAAGTATCATCTGTCGCAACATTTTAATAAGATTCATCTAGCCAAAGGCGGTAAAAAGTCTTCTGCTACAGAAAAGGAAACGTTACCTTCCAAATTTTCATTCGATTTTTTAtcttcaaaacaaaattttatcaaagaaGAATTCGAGTATCCCAGCGAACAAGACGATAATTCGAATTTAAATTTCGACCAAGAAGACGATAACGGCATTAAAGAAGAATACGACGAAGATTCTAACAATAAAAACGAAACGCCCAGTGCGCCTAAGGAAATAGATTCTTCTCATGACATGTACACGAATATCATTACGAATTATACGCCGCCGTTGAACGATGGCGATTTTAAATGTCCCAAATGCTCTAAAGGCTTCCATAAAAAAATGCTACTcaagaaacacaaaaagaatTGCAGACCGAGAATGCAAAAAGATTTGTTAACGAGATGTAAAAGCTGCGCTAGAATCTTTAAAGACCGCCAAAGCCTAGCCAAACATCTAGTAAACTATCATTCGGAGTACACTTGCGAAATTTGTACCGAAAAAGTACAAAGTAAATGCGAAATAGTGTCACATATAAGATTTAGACACCCCGGCTGTCCGTTATTTTGCAGGATCTGTACAAATGTTCTAAGAAGCAAGAGCGATCTTCAAGAACACATGAGAAACCATTTCGATTCtcacatttgtcagttttgcgGTGACCCGTTACCGAGTAAAATCAAACTAAAGATGCACATACTCAGTTTACATCGTAAAATTCTAAGCTTATCGTGTGGAATATGCTTAAAGTTGTTTGAAAACCAACACATTCTCCGAGATCACGTTAAATTAATCCACAAAAATCAACTGACACCTTTAACGTCGTGTCCAGTTTGCGGCAAAAATTACGGCTCCAAGTGGAAAACCTACGATCATATAAACAAATCCCATGGTAGAATATTCAGGGCGTGTAAAACTTGTTTGGAAATATTCGATAACGATGCTCAATTACAGGCGCATTGTGATGTTACCGCTCACGGGGGAGGAGGACAAGTCGGTAATTCTAATACGACGGCTCTCAGAAACAGTATTATGGCTCATATAAAGTCTGCAATTAATGAAGTGGTGGAACAGAACGAAGAAAACAATGATGATTCAGATAGTGATGATGAGGGTGAATCTGACGgtgattataaaaaacaagagtTCGAAGAACCCAAGTTCTATTTATCCCAAAACGCCAAAATATCTTTATTAGAAAAACGATTGTTGGGTAAGACATTAACAGATGACGAAATCAGTATTAAACCTAAATTAGCAGCAGTCAGTAGCAATAAGAAAACTAAAATACCCATCAACGAAACCAAATCCAAAACGGcaaacaaaaaagaagaagaatcaGATCCTACAAATCCTCAAACAAATTCGTCTAAGCGCACAGTGTACGTTAACAGTAATGATCCGTCTTATTGTGAAATTTGCTACAAGACTTGGCCGGCGAAGAAGCATCTTTGGCAACATTACATACGTTGTCATAAACGCGTAGCAGCTACTGTTTGTGGAATATGCTTAAAAACGAATGACAACTACAACACCCTTCAGCATCATCTAAGAGACAATCACCCGAAACTATTACACGGTCAAGGTTTTGGTTCGAATTTTATATGCAGGATATGCGGAAGATATCACAACGCTAGTTCGAAGTTAAGACTGCACATGGTAATACACGAAAATTTCGATTGGAAACTTTTGGACGGAGATAAATCCGACAAAGATATGATTTCTAAGTCGACAACTAACGGCTTCAAATTTACAAAAGGATCCGAAAGAGAAGAATAcgatgaaaatattaattatgaAAGTCTAATCGAACAAGTCGAGTGCTCTTCACAGTCAGAATCTGATAACGATCAAGCCGTGCAACTCAAACAAGACGATTCTTCTTCATCCGACGAACAAGAAGAAGCCAGCGAAGATTCTGTAATATCGTCCAAttctatacagggtgaaattaataaaaaaatgccgATATCAACGCAACAAGAATCCTCACAACGTCAAGATTGTTCTTCCTCTAGCGAAGATTCAAGCACAAGTTATTCGGAAGGAAGTAAAAGTGATTCTTCCGATGATTGTTCTCGAGCGTCTCAGTCACTGTCTTCGCAAAGTAAGTTTAATCCCAGATCGAATTCCAACACTGCTGATGATTCGGTGTCGAGCGGTAATATTTTTAGGCGGAAACCAGGAGAACTAGATTCGGCTATTAAATCCATTAGTTATGAATGCATGGAACCGGTGGATCTCAACGTTGTCGACGATTATTGCGACTTGCAAAATAATTGTCTTAACGAGAATGAAATCGAATCTGCTGTTGGTAGTATTCTTTAA
Protein Sequence: MLRKYILHPVYTVIVLKFLVTPYSLLPDTICGDCAESVDNFYSFIKNCLQNIIILEAQYDIQESCLKSKQKRDKSCLVDFSHKQTSKGNQTDDYLDVLIGRHVDLDEFRQSFPHTINYLNNPISTVTQNEIRLVDYDVDSESSLDECFDGKGEIILCDKLQSFTKICKLVDSYTSRRVFPSKTDYFDDTQKNLITEISQRKNLKRKNEFIETYKPKIYKLDSCNRRKSKIPKKLDTPNICEENFNYEHRENFLKQDPIKKELINGDPENLQNTNEKLLSSLPQSCLLCDTHFSGPSALASHVFEFHGIDMSEVVSSGSGESFPEKSKKKLPNLVKISDLKKTESIDNNQSSEPQQDSKFSKLSCPNCSGVFTSKQDLMMHLRLKHAQIAGFVCGICLYQCSSYLNLKNHLQNCSNPQATPTKYICQICQYGDDNFKWLENHVLVHDFLIETCKKQMRMFDPEDYIDINEACANTPYKGLNCVDCGLDEFYSFKEFSAHRRNEHSNFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLAKGGKKSSATEKETLPSKFSFDFLSSKQNFIKEEFEYPSEQDDNSNLNFDQEDDNGIKEEYDEDSNNKNETPSAPKEIDSSHDMYTNIITNYTPPLNDGDFKCPKCSKGFHKKMLLKKHKKNCRPRMQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYTCEICTEKVQSKCEIVSHIRFRHPGCPLFCRICTNVLRSKSDLQEHMRNHFDSHICQFCGDPLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILRDHVKLIHKNQLTPLTSCPVCGKNYGSKWKTYDHINKSHGRIFRACKTCLEIFDNDAQLQAHCDVTAHGGGGQVGNSNTTALRNSIMAHIKSAINEVVEQNEENNDDSDSDDEGESDGDYKKQEFEEPKFYLSQNAKISLLEKRLLGKTLTDDEISIKPKLAAVSSNKKTKIPINETKSKTANKKEEESDPTNPQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKRVAATVCGICLKTNDNYNTLQHHLRDNHPKLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWKLLDGDKSDKDMISKSTTNGFKFTKGSEREEYDENINYESLIEQVECSSQSESDNDQAVQLKQDDSSSSDEQEEASEDSVISSNSIQGEINKKMPISTQQESSQRQDCSSSSEDSSTSYSEGSKSDSSDDCSRASQSLSSQSKFNPRSNSNTADDSVSSGNIFRRKPGELDSAIKSISYECMEPVDLNVVDDYCDLQNNCLNENEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00736187;
90% Identity: iTF_00736187;
80% Identity: -