Basic Information

Gene Symbol
bab1
Assembly
GCA_963978555.1
Location
OZ021716.1:16340771-16353098[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 5.9e-11 2.6e-08 34.6 0.0 1 39 414 453 414 457 0.90
2 4 4.2e-12 1.9e-09 38.3 0.1 1 39 468 506 468 509 0.95
3 4 5.5e-18 2.5e-15 57.1 0.0 1 45 523 568 523 568 0.98
4 4 1.4e-15 6.3e-13 49.4 0.0 1 39 575 614 575 616 0.95

Sequence Information

Coding Sequence
ATGGACGACAACGATCAACACTACTGTCTTCGTTGGAACAATTATCAAAGTAATATGACTTCTGTGTTTCATCAATTATTACAAAACGAAGATTTTGTCGATGTCACACTAGCCTGTAATGACAGATCTCTTAAAGCACACAAGGTAGTTTTATCAGCTTGTTCTTCGTATTTCCAAAAGCTTCTTTTAGAAAACCCCTGCAAACACCCGACGATAATAATGCCTCAGGATGTCGGTTACGAAGATCTCAAATTTATCATCGAGTTCGTTTACAAAGGGGAAATCGACGTCTCTCAGCCGGAACTTCAGTCCCTACTGCGGACGGCGGATCAATTAAAGATCAAAGGATTGTGCGAAACAGACGATAAGGAAAATAGGGACAGCAGAGAACCTTTGGATTTGCCATTGTCGCTGCACTGCAAGAGTGACAGAAAATCTTCGGAAACCAAACACCTCAAGTTACAACAAGAAGTGCCTCCTGAAACGAAGACATTCTTTCAAACCATCGAAGATTCGAATGAAATTAGCAACGACGAATCGCAGCAACAACCATCTCAAGAAAACCCAAACAAAGAGACAAAAAACGACGGAGAAAAATATAAGGAAAGCGAAAACAAACAACAATCGAATGAGGAGACCGAAGAAAATGACATGCCAGTAGCTTCGGACCAACCAGAGCCGAAAAGAAAGAGGCTGTCCAAGCAACAAGTCGAGCAAACGAAACCTCTAAACATGAGCAGCCATGGCCTACTATCGGGACAGACTATATTTTCTCACTTCGGCGTCGACACAGACGACTTTCCTCCCGAACCACAAGCTCCTTCAGCGATTCCTGTTGGTCATGTTGACATGTCAACGACCACCGTCGACCATTCCCCTACCAGGACGATACTTACCGGACCAATACACCGCACAGACATCTCAGACTCTACCAAATATAcgcttgaaataaaaaaagaagctgACATTAAATTGGAAACGTTAAGATCGTATGACCAAGACAGtttaTTGGATATGGAGTCACATTTGTCTGGTCCGGATCATTCTATGGACAGCCACGATGATGGTGATAGAAGCATACATCATCTTATGGGACAGCATCCGGATTTCACCGGGATACCCGGTGTTTCAAATAGTCTAGATGTAAATAACGACGATCAAGTACCTGGAATGAAAAATAACGGCCATAGCGAAAATTCAACGCCGAATAGGTCGCATGGTGGTGGACCGAAGACTTGGACCCAAGAAGACATGGATATGGCGTTGGATGCTTTAAGGAATCACAATATGAGTCTAACTAAGgCATCGGCCACTTACGGAATTCCCTCCACTACTTTATGGCAAAGAGCTCATAGATTAGGAATAGATACTCCCAAAAAAGAAGGACCTACTAAATCATGGACTgaagaaaatttaaacaatGCTCTGGAAGCATTAAGAACAGGCACGATATCGGCGAATAAAGCTAGCAAAGCATTCGgtatTCCTAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTTAACGCGGCCCCGACGACGTGGACTCCAGAAGACTTGGAAAAAGCACTCGAGTCCATAAGAACGGGTCAAACTTCCGTACAAAAAGCTTCGACTGAATTCGGGATTCCCACCGGAACGCTCTACGGTAGATGTAAAAGGGAAGGAATCGAATTGTCGAGGTCTAATCCCACTCCTTGGTCGGAGGACGCGATGGGGGAAGCTTTGGAAGCTGTTAGGTTAGGCCATATGTCCATCAACCAAGCGGCCATCCACTACAACCTGCCTTACTCTTCGCTATACGGCCGCTTCAAACGCGGCCTtaaattcgaagcggacatagTGGATTATCACGATCTCAATCAAGACAGCCAATTGCAAATGGATCATACGTTCGGAATGGAATACACTACCTCTCCACCTCAGATTCAATATCAGAATCAGAACAGTTGA
Protein Sequence
MDDNDQHYCLRWNNYQSNMTSVFHQLLQNEDFVDVTLACNDRSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVGYEDLKFIIEFVYKGEIDVSQPELQSLLRTADQLKIKGLCETDDKENRDSREPLDLPLSLHCKSDRKSSETKHLKLQQEVPPETKTFFQTIEDSNEISNDESQQQPSQENPNKETKNDGEKYKESENKQQSNEETEENDMPVASDQPEPKRKRLSKQQVEQTKPLNMSSHGLLSGQTIFSHFGVDTDDFPPEPQAPSAIPVGHVDMSTTTVDHSPTRTILTGPIHRTDISDSTKYTLEIKKEADIKLETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSIHHLMGQHPDFTGIPGVSNSLDVNNDDQVPGMKNNGHSENSTPNRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGLKFEADIVDYHDLNQDSQLQMDHTFGMEYTTSPPQIQYQNQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00458778;
80% Identity
iTF_00735934;