Lcap040399.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421408.1:2368801-2374142[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 3.2e-08 34.8 0.0 1 39 341 380 341 384 0.90 2 4 9.7e-12 2.3e-09 38.5 0.1 1 39 395 433 395 436 0.95 3 4 1.3e-17 3e-15 57.3 0.0 1 45 450 495 450 495 0.98 4 4 3.2e-15 7.6e-13 49.6 0.0 1 39 502 541 502 543 0.95
Sequence Information
- Coding Sequence
- ATGAAACCTGTCCTGGTTAAATTGGGGAATTTCGAGATACGTAGTCGAAGATTGGGATGTAAGACCGAGGGTTGCCTGGACTCCTGGGTCGTGTCCCTACTGCGGACGGCGGATCAATTAAAGATCAAAGGATTGTGCGAAACTGACGATAAAGAAAATAGGGACAGCAGAGAACCTTTAGATTTACCATTGTCGCTGCATTGCAAAAGTGGCAGGAAATCACCCGACACCAAACACCTCAAGTTACAAGAAGAGGTGCCTCCTGAAGCGAAAACATTCTTTCAAACCATCGAAGATTCGAATGAAATTAGCAACGACGAAGCGCAGCAACCCGCCCAAGAAAACCCAAACAAAGAGGCAAAAAACGACGGTGAAAAAGATAAGGAAAGCGAAAACGAACAACAATCGAATGAGGAGACCGAAGAAAATGACATGCCAGTAGCTTCGGACCAACCAGAGCCGAAAAGAAAGAGGCTGTCCAAGCAACAAGTCGAGCAAACGAAACCTCTAAACATGAGCAGCCATGGCCTACTATCGGGACAGACTATATTTTCTCACTTCGGCGTCGACACTGACGACTTTCCTCCCGAACCTCAAGCTCCCTCGGCGATTCCTGTCGGTCATGTTGACATGTCAACGACCACCGTCGATCATTCCCCTACCCGGACCATACTTACAGCACCAATTCATCGCACTGACATCTCAGACTCCACCAAATATAcgcttgaaataaaaaaagaagcagaCATTAAATTGGAAACGCTGAGATCCTATGACCAAGACAGTTTATTGGATATGGAGTCACATTTGTCTGGTCCGGATCATTCTATGGATAGCCACGACGATGGTGATAGGAGCATACACCATCTTATGGGACAGCATCCGGATTTCAGCGGAATTCCCGGTGTTTCCAATAGTCTAGaTGTAAATAACGATGATCAAGTACCTGGAATGAAAAATAACGGCCATAGCGAAAATGTAACGCCAAATAGGTCACACGGTGGTGGGCCAAAGACTTGGACTCAAGAAGATATGGATATGGCGTTGGACGCCTTGAGGAATCACAATATGAGTCTAACTAAGgCATCTGCTACTTACGGTATTCCCTCCACTACCTTATGGCAAAGAGCACATAGGTTAGGAATAGATACACCCAAAAAAGAAGGACCTACTAAATCTTGGACtgaagaaaatttaaacaatgctCTGGAAGCATTAAGAACAGGCACGATATCGGCGAATAAAGCTAGCAAAGCATTCGGTATTCCTAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTCAACGCGGCCCCGACGACATGGACTCCCGAAGACTTGGAAAAAGCACTCGAGTCCATACGAACGGGTCAAACTTCCGTACAAAAAGCCTCGACAGAATTCGGGATTCCCACCGGTACGCTATATGGTAGATGTAAACGGGAAGGAATAGAATTGTCGAGGTCTAATCCTACTCCTTGGTCCGAGGACGCGATGGGGGAAGCTTTGGAAGCTGTTAGGTTAGGCCATATGTCCATCAACCAAGCAGCCATCCACTACAACCTGCCTTACTCTTCGCTATACGGCCGCTTCAAACGCGGCCTTAAATTCGAAGCCGACATAGTGGACTATCATGATCTCAATCAAGACAGCCAATTGCAGATGGATCACACATTCGGAATGGAATACACAACCTCTCCACCTCAGATTCAATATCAGAATCAGAACAGTTGA
- Protein Sequence
- MKPVLVKLGNFEIRSRRLGCKTEGCLDSWVVSLLRTADQLKIKGLCETDDKENRDSREPLDLPLSLHCKSGRKSPDTKHLKLQEEVPPEAKTFFQTIEDSNEISNDEAQQPAQENPNKEAKNDGEKDKESENEQQSNEETEENDMPVASDQPEPKRKRLSKQQVEQTKPLNMSSHGLLSGQTIFSHFGVDTDDFPPEPQAPSAIPVGHVDMSTTTVDHSPTRTILTAPIHRTDISDSTKYTLEIKKEADIKLETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSIHHLMGQHPDFSGIPGVSNSLDVNNDDQVPGMKNNGHSENVTPNRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGLKFEADIVDYHDLNQDSQLQMDHTFGMEYTTSPPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735400;
- 90% Identity
- iTF_00458778;
- 80% Identity
- -