Aaln010431.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467709.1:22275136-22296371[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 3.1e-08 34.9 0.0 1 39 319 358 319 362 0.90 2 4 1.2e-12 2.2e-09 38.5 0.1 1 39 373 411 373 414 0.95 3 4 1.3e-18 2.5e-15 57.6 0.0 1 45 428 473 428 473 0.98 4 4 2.1e-16 3.9e-13 50.5 0.0 1 39 480 519 480 523 0.94
Sequence Information
- Coding Sequence
- ATGTCTGTACTGTCATTGCTGCGCACAGCGGACCAATTAAAGATCAAAGGATTGTGCGAAACACCGGACGACAAAGAAAATAGGGAAATCAGAGAAAATTTGGATTTGTTGCCGTTGTCGCTTCATTGTAAAAGTGGCAGGAAATCGCCAGGATCTAAGTCTCAGGAGCTCAGTCCACCTAAGGCGAAATACCCAAAATCGAAACTTCATCCGATTGCCGATTCGAATGAAATTAGCGGTGACGAAGAAGGAGGCGGAGCAGGAGCAGACAAGGCGGGAGAGAGCAGTGACGGAGgagagagagaaaaagaaaaGGAGAGAGGAGACGAACAACAATCGAATGAGGAGACCGAAGAAAATGACATGCCAGTAGCTTCGGATCATCATCACGAGCCGAAAAGAAAGAGGCCGTCCCCGCCACTACCCGAACAAACAAAACCTCTCAACATGAGCAGCCATGGCCTACTCTCGGGACAGACCATTTTCTCCCATTTCGGCGTTGACACAGATGACTTTCCGCCCGAACCTCCTGCTCCCTCTGCCATTCCTGTGGGCCATATGGATATGTCGACAACGGCGACCGATCACTCTCCCACTCGAACGATTCTCACAGGACCGATGCATCGCACTGACATCTCAGACTCCACCAAGTATACGCTGGAAATCAAGAAGGAGGCCGATATCAAGTTAGAAACGTTGCGTTCCTATGATCAAGACAGtttgctgGATATGGAGTCACATCTATCAGGTCCTGACCATTCAATGGACAGCCATGACGATGGGGATAGGAGCATGCACCAGCTTATGGGGCAGCATGGAGATTTCGGTGGGATTCCTGGAGTATCAAATAGACTAGatgtaAATATCGATGACCAAGTACCTGGAATGAAAAATAACGGCCATACCGAAAATCTAAACCCGCCACGGTCCCATGGTGGTGGACCAAAAACTTGGACTCAGGAAGATATGGATATGGCGTTAGATGCCTTAAGAAATCACAATATGAGCCTAACTAAGGCATCCGCAACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGGTTAGGAATAGACACTCCTAAAAAAGAAGGACCTACAAAGTCATGGACTgaagaaaatttaaacaatgcacTGGAAGCATTAAGGACAGGCACTATTTCCGCTAACAAAGCTAGCAAAGCATTCGgCATTCCCAGTAGCACACTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCGTTTAACGCGGCACCGACGACATGGACCCCCGACGACTTGGAAAAAGCACTCGAGTCTATACGAACGGGGCAAACGTCCGTACAAAAAGCTTCTACTGAATTTGGCATTCCCACCGGAACATTATACGGCAGATGCAAACGAGAAGGTATAGAGTTGTCGAGATCGAATCCGACACCTTGGTCAGAAGACGCCATGGGAGAAGCTTTGGAGGCTGTTAGGTTAGGACACATGTCCATCAATCAAGCGGCTATCCATTACAACCTGCCTTACTCATCGTTGTATGGCCGCTTTAAGCGAGGCATCAAATACGATTCTGACAACGTGGAATTCGTCGATCTCAACCAAGACAGCCAGTTGCAGATGGATCACACTTTCGGAATGGAATACACAACCTCTCCACCTCAAAttcaatatcaaaatcagaATAGCTGA
- Protein Sequence
- MSVLSLLRTADQLKIKGLCETPDDKENREIRENLDLLPLSLHCKSGRKSPGSKSQELSPPKAKYPKSKLHPIADSNEISGDEEGGGAGADKAGESSDGGEREKEKERGDEQQSNEETEENDMPVASDHHHEPKRKRPSPPLPEQTKPLNMSSHGLLSGQTIFSHFGVDTDDFPPEPPAPSAIPVGHMDMSTTATDHSPTRTILTGPMHRTDISDSTKYTLEIKKEADIKLETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSMHQLMGQHGDFGGIPGVSNRLDVNIDDQVPGMKNNGHTENLNPPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNVEFVDLNQDSQLQMDHTFGMEYTTSPPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735400;
- 90% Identity
- -
- 80% Identity
- -